| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1312 |
|---|
| Symbol | |
|---|
| ID | 4848223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | + |
|---|
| Start bp | 1293866 |
|---|
| End bp | 1297075 |
|---|
| Gene Length | 3210 bp |
|---|
| Protein Length | 1069 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640116003 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001047224 |
|---|
| Protein GI | 126179259 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.530092 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCT TCGGTAATAT TCTGGGTCAG GGGAAGAACG CAAACCCCTC GATACAGCAG
GGGACCTCTC AGTTCGAGGC CGGAAACTAC GGCGAGGCGG TGAAGAGTTT CGAGAAAGCG
CTCAAGATCG AGCCTGAAAA TGGCTTTTCC CGGCTGTATA TGGGGCGGGC GCTTGCCTGT
CTCGGCAGGG ACGGCGAAGC CGCGGAGTGG CTGAAGAAAG CCCTCGAGTC GGCTCCCGGC
GATGCCGGGA CGCTGCGGGT GCTGGGACAT GTCCTCGCCA GAACCGGTGA GTACAAGGAG
GCGGCCGGGT GTTTCGCCCG GATCGTCGAA GAGAAACCCA TGGACGCGAA CGCCTCCTAC
TGGCACGGGG AGATGCTTGA ACGGCTCGGC CGGTATGCCG ACGCGGCGTC GGCCTATGCA
CGGGCGCTGG CAGGAGACCC GGAGAATACC GTCCTGCGGG AGAGGTGCGG GAGGATGTTC
GAGCGGATCG GCGACTTCCG GGAAGCGGCG GCATGCTTTG AGAAGATCCT CAGGACAAAT
CCCGGCAGCA CCGATCTGCT CTCTCGAATC GGGGCCGCAT ACCTCAACCA GGGCGATTAC
TCGAAAGCCG TCGGTCTCTT CGACCGGGTG CTCGATACAG AGCCGCAGAA CATCGACGCG
CTTTACGGAA AAGCCCGGGC GCTCGAGCAC CTCGGCCTGT TCCAGGAAGC TGCCGACTGC
GGCGCCGGGA TCGTTGCCCT CGAACCCGAG AACATCCCTG CCTGGTATCA CCGCGGCTCA
ATGCTTCTCC GCGCAGGAAA GCACGAAGAC GCACTGGAGT GCTTCGAGAA GGTCGCTCTC
GCCGACCCGG ATCACGTCCC GGTTCGCTAC GCCATGGGAA TGGTCTACGA CGCCCTCGGC
CGCTACGAGC GGGCGGTCAA GAGTTTCGAC CGGATCCTGA AGCACGACCA GGGTCAGGTC
CAGATATGGT ACGCACGCGG CATGGCGCTC TTCCGGTTCG GCCAGTACGC CGAGGCAATC
CGGTCGTTCG ACCGCGTGCT CGAGAGCCGG GCGACGACCG GGATGAAGTG GATCGGAGAC
GGCACCGACC TTGCGCTCTT CGAGCGGGAC GAAGGGGGAG CCCCCCGGAG ACAGAAGCCG
CTGAAGTTCG ATGCGTTGAA CGAGCTCGTT CACAACTGCC GGGGAACTGC GCTCCTCCAC
CTCGGGCGGT ATGCCGAGGC GCAGAAGGAG TTCGAGCATG TCCTTGATGC CGATCCCGGG
AACGTCTCCG TCCTGCAGCG GAGCGGCACC GCGCTCCTCC ATCTCGGCAG ATACGAGGAG
GCCGCACGCT GCCTGGATGC GGTCCTTGAG AAAGAGCCGC ATAACGCCGT CGCCGGGTCG
ATGAAAGCGG ACGCGCTCAT GAACCTCGGC AGGCACGACG ATGCGCTGGC GTGCCTTGAT
TCGGTGCAGG GAGCCGGCGG CGCCGAACCC CATCTTCTTT ACCGGAAGGG AGCCGCCCTC
CTGCACATCG GACGATATAC GGAGGCGGTA GAGGCGTTCG AAGCCCTCCT CAACGTCAAT
CCCGCCGATG CAGCAGCGGA GAACAGCAGG GGAGAAGCGC TCGTGCACCT CGGACGGTAC
GAGGAGGCGC TCGCCTGCTA TGACCGGGCG CTCTCGGCCG TCCCGGCCGA CCGTGCCGCT
CTGCTCGGCC GGAGCACGGC GCTCGAACGC CTCGGGCGGT ATGAAGAGGC GCTCGAATCC
ATCGACCGGT TGACACAGGC CGGTCCCGGG GACACCGGGA CGCTTCTTCG GAAGGCATGG
ATCCTCGAAG CTCTCGGCCG CTATGATGCA GCCGTCGAGT GTTACGAGGC CCTCCTTGCA
GCCGATCCGA AAACCGGATA CCCGGTGAAT CTCGGGTTTG TTCTCGCCAT GCTCGGGCGG
TACGAGGAGG CCGCCGGACG GTTCGAGGAA GCCACGCGTG CCGACCCGGA CAACTTCTTT
GCGTGGTTCA ACCGGGGCCG GGCGCTGGAG AGGATGGGGC AGTACGCGGA TGCGGCCGGG
TGCTACGCAA AAGTGGCCGA AGGCCGACCG GAGGACACCG GCGCCTGCTT TGCGCTCGCC
GTCACCTTCG CACGGCTCGG CAGACATCAG AAGGCGATCG AGTGCTGCGA CCGGGTGCTC
GCCGCCGACG CCTCGAACGC CGCGGTTGCA AGGATCCGGG CGGATATGCT GGAAGCCGTC
GGCAAGCACG AAGAGGCGGC GGAAGCATAC GAGCAGTACC TGAAGAACTC TCCCGACGAC
CGCGACGCCA GGATGGCGTT CGGTATGGCG CTCGAGCGGG ACGGGAAGTT CGGCGACGCG
ATAAAGCAGT ATGCGCTGGT GCTCGAGGGC GACGAACGCG ACACCGAAGC GTGGTACACC
CTCGAGAGCG CGCTCGTGCA CATGGGACGA TACGAAGAGG CGCTCGAGTG TTCCGACAGC
ATCGTCGAGG CGAGCCCGGA GAGCTGGGCC GCCTGGCAGC GGCGCGGAGA GATCTTCATG
TGGCTTGGCC GCTACGCCGA CGCGGTGGAG TGCTTCGAGA AGGTGATCAA GGCCGATCCC
GCCGACGTTC TCACCCTCAG AAGACTCGGC GAGGCCCACG AAAAGGCCGG CAGGTACGAG
GATGCCCTCG CCGCCTACAC GCAGGTGCTC GACCGGGAAC CGACCAGCAT CGAGACCCTC
CATGCCCGCT CGTCGGCCCT CATCCATCTC GGGCGATACA ATGAGGCGGT CAAGTCGATC
GACAAGATCA TCGTTCTCCA GGACGAGAAC CCCGCAGCGC TCTTCATGCG GGGGACGGTG
CTCGAGAAGG CGGGCAGGCA CGACGACGCT CTCGCAAGCT ACGAGAAAGC GCTCTCGATC
GACCCGAAGA ACGCGGCCGT CTGGAACGCG GCGGGGAGGC TCAAGGATGC GCTGGGACGG
CACGAAGACG CCGTCAAAGC GTTCGACAAG GCCATCGATC TGGACGGGGG AGACATTCAT
GCCTGGCTCG CGAAGGGACT CGCTCTCGGC CACCTGGGTA AACCCGACCG GGCGACGACC
TGCTTTGAGA AGGTCCTGGA GGGTGACCCC CGCCACGCCC GGGCATGGTA CCTGAAAGGG
AGAGCGCTCG ATAAGCAGGG CAGATTTGCC GAAGCGGTGG AGTGCTTCAA AGAGGCGCTC
GAGAACGGGG ACGGAGGCGA AGAAGAATGA
|
|---|
| Protein sequence | MDFFGNILGQ GKNANPSIQQ GTSQFEAGNY GEAVKSFEKA LKIEPENGFS RLYMGRALAC
LGRDGEAAEW LKKALESAPG DAGTLRVLGH VLARTGEYKE AAGCFARIVE EKPMDANASY
WHGEMLERLG RYADAASAYA RALAGDPENT VLRERCGRMF ERIGDFREAA ACFEKILRTN
PGSTDLLSRI GAAYLNQGDY SKAVGLFDRV LDTEPQNIDA LYGKARALEH LGLFQEAADC
GAGIVALEPE NIPAWYHRGS MLLRAGKHED ALECFEKVAL ADPDHVPVRY AMGMVYDALG
RYERAVKSFD RILKHDQGQV QIWYARGMAL FRFGQYAEAI RSFDRVLESR ATTGMKWIGD
GTDLALFERD EGGAPRRQKP LKFDALNELV HNCRGTALLH LGRYAEAQKE FEHVLDADPG
NVSVLQRSGT ALLHLGRYEE AARCLDAVLE KEPHNAVAGS MKADALMNLG RHDDALACLD
SVQGAGGAEP HLLYRKGAAL LHIGRYTEAV EAFEALLNVN PADAAAENSR GEALVHLGRY
EEALACYDRA LSAVPADRAA LLGRSTALER LGRYEEALES IDRLTQAGPG DTGTLLRKAW
ILEALGRYDA AVECYEALLA ADPKTGYPVN LGFVLAMLGR YEEAAGRFEE ATRADPDNFF
AWFNRGRALE RMGQYADAAG CYAKVAEGRP EDTGACFALA VTFARLGRHQ KAIECCDRVL
AADASNAAVA RIRADMLEAV GKHEEAAEAY EQYLKNSPDD RDARMAFGMA LERDGKFGDA
IKQYALVLEG DERDTEAWYT LESALVHMGR YEEALECSDS IVEASPESWA AWQRRGEIFM
WLGRYADAVE CFEKVIKADP ADVLTLRRLG EAHEKAGRYE DALAAYTQVL DREPTSIETL
HARSSALIHL GRYNEAVKSI DKIIVLQDEN PAALFMRGTV LEKAGRHDDA LASYEKALSI
DPKNAAVWNA AGRLKDALGR HEDAVKAFDK AIDLDGGDIH AWLAKGLALG HLGKPDRATT
CFEKVLEGDP RHARAWYLKG RALDKQGRFA EAVECFKEAL ENGDGGEEE
|
|---|
| |