| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1297 |
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| Symbol | |
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| ID | 4847419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanoculleus marisnigri JR1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009051 |
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| Strand | - |
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| Start bp | 1280248 |
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| End bp | 1281624 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640115988 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001047209 |
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| Protein GI | 126179244 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase
[COG0703] Shikimate kinase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGGTCG TCCTTACCGG CTTCCGGGGG ACCGGGAAGA CATCGGTCGG ACTGATCCTC
GCGGATCGCC TCGGGCTGCC GTTCTACGAC ACCGATGCGA TGATCGAGCG CCGGGCCGGG
ATGCCGATCC CGGAGATCTT CCGGCAGCAC GGGGAAGCGC ACTTCCGCGC CCTCGAGCGG
GAGGTCGTCG CGGCGCTCCG GACGGCGGAG GGCGTGATCG GCACCGGCGG CGGGGCGGTA
TGCGACCCGG CAAACGTCGC CGACCTCCGG CGGCACGGCA GGGTCTTCCT CCTGACCGCC
CCGCCCGGGG TCATCGTTGA GCGGATCGCC GGGAGCGACC GGCCGGGGCT GACCGATCTG
GCCCCCGAAG AGGAGGTGCG CACGCTCCTT CTCCGGAGAA AGGAGGCCTA CCTCGGCGCG
GCCGACGCCT GCATCGATAC CGGGAGGCGC ACGCCCGGGG AGGTCGCGGA TATGATCGTC
CGGGAGCAAG GGTATGGGAA TGTGACCGCA CGCGAAGACG CGAAGACGCG AAGGCCTGAG
CGCGACGCCC TCCTTGAACG GTTCGGCCTT TCGGGCCTCG GGGCTATGAT CGACCGGAAC
CCGGGCCTTA TGGTATGCGC CATCGCCGGC AACCCCTGCG CCCACAGCAG GAGCCCGCTC
CTCTACAACC GGCTCTTTCA ACACTTCGGG ATGAACTATC ACTACACGCG CTTCGAGTGG
CCGGATGCGG GAACCATCGT CCGCCTCGCG ACCCTCCTCC CCCTGAAGGG CTTATCCGTA
ACCATCCCGT TCAAGACCGA CGTGATGCGC CATCTCGATG AGATCGACGA GCACGCGACA
GCGATCGGGG CGGTGAACAC CATTGTCCGG TGTGGCGGGA GGATGTACGG CCACAACACC
GACTGGCTGG GGGTACAGAT CCCGCTCGCC CACCGGCGGG GCGGCCGGGC GGCGGTGCTC
GGCGCCGGGG GCGCGGCGGC CGCGGCGGTC TACGCGCTCA GAACGCTTGA TATGGACGTC
ACGGTGCTTG CCCGGGCTCC GGGTGCAGCG CGGGGGCTTG CAGAGCGGTT CGACTGTCGG
TGGGGCGGTC TCGAAGAGTT CAAAGGGGGC GACGCCGATG TAGTGGTACA CGCAACCCCG
GTCGGGATGG AGCCCGACAC CCGGAGCCTG CTTGCCGCGG ACGACCTCGA GCGTGGGACG
ACCGTATTTG ACCTCGTCTA CACGCCACCG GAGACGCCGC TCATCCGGGC GGCGAGAGAG
GCCGGGTGCG AGACGATACC CGGCACGGAG ATGTTCGTCC ACCAGGCGAC GGAGCAGTTC
CGGCTGATAA CCGGACTTGC GGTCACGCCG GAACTGGTTC GGGAGATGCT TGCATGA
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| Protein sequence | MKVVLTGFRG TGKTSVGLIL ADRLGLPFYD TDAMIERRAG MPIPEIFRQH GEAHFRALER
EVVAALRTAE GVIGTGGGAV CDPANVADLR RHGRVFLLTA PPGVIVERIA GSDRPGLTDL
APEEEVRTLL LRRKEAYLGA ADACIDTGRR TPGEVADMIV REQGYGNVTA REDAKTRRPE
RDALLERFGL SGLGAMIDRN PGLMVCAIAG NPCAHSRSPL LYNRLFQHFG MNYHYTRFEW
PDAGTIVRLA TLLPLKGLSV TIPFKTDVMR HLDEIDEHAT AIGAVNTIVR CGGRMYGHNT
DWLGVQIPLA HRRGGRAAVL GAGGAAAAAV YALRTLDMDV TVLARAPGAA RGLAERFDCR
WGGLEEFKGG DADVVVHATP VGMEPDTRSL LAADDLERGT TVFDLVYTPP ETPLIRAARE
AGCETIPGTE MFVHQATEQF RLITGLAVTP ELVREMLA
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