| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1212 |
|---|
| Symbol | |
|---|
| ID | 4847610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | - |
|---|
| Start bp | 1187609 |
|---|
| End bp | 1191448 |
|---|
| Gene Length | 3840 bp |
|---|
| Protein Length | 1279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640115902 |
|---|
| Product | Ig domain-containing protein |
|---|
| Protein accession | YP_001047125 |
|---|
| Protein GI | 126179160 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAC ACACGTATCT GGCACTGTTG TGCGCAGTCG TTATCATCGG GCTGTTGACC
TCGCCGGTTA TGGCGGTGGA AGCGGCGTCG GGGGAGGAGA TCTATCGCCC CTTCGTAAAC
GCGCAGGAAC GTCCTGATAT CGACGGCGAC ATGATCGTCT GGGAAGACGA TCGAAACGGT
AACAAAGACA TCTACTTTGG AACCGTAGAC GAATTCCGGA ACAAACCACC GTTAACCACC
ACCCGCGTCG GCGAGAGGAT AACATCCGAT GACGCCTCGC AGGAGAAACC GTCCATCTCG
GGCGACTACA TCGTCTGGCA GGATGACCGC AACGGGAACT GGGACATCTA CCTCTATCAG
CGCTCGACGG GTGAAGAGAC ACAACTCACC ACCGACACAG GCGATCAGTG GCTGCCCATC
GTCCGCGGGA ACTACGTCGC CTGGTACGAC GACAGTAGCG GCGACACGAA GATCGTCCTC
TACGACATCG CCGCCGGGGC CGTGAAGGCC ACCATCGACG CTGACGCAAA GACAACGATT
CCCGACGGGG CTACCGGGGT CAAGCCCGCG CTCTCGGAGA AGTACGTCGC CTGGATAGAA
AAGGCGGACG AACGGGCCTG GTACTACGAC ATCGCGGACG AGACGAAGAT GCAGGTGTCC
GGGACCGGGC TCCGCCACTC CTGGCCCTCG CTCTACGGGA GCCAGATAGC CTGGGAGTGT
TACCTTAACA GATCCGGCAT CCAGGATCCC GAGATCTACC TGATGGACCT CGATAATCCC
TCCGGCGGGG AGCAGCAGAT CACAAACGCC CCTAATTATC AGGTCTCGCC GGCGCTCAGC
GAGAACATCA TCGCCTGGGA GGACATGCAG GATGGGCCGC GGGGCATCTA CATGTACGAC
CTTGCCACCG GCGGGGAGGA GATGTCCGTA TTCGCGCCCG AGGATATCTA CGATGAACAA
CTCTACCCGG CCGCCAGCGG CAACACGATC GTCTGGCAGA GAGGCACGGG CATTAACTCG
AACATCTACA TCTTCATCTA CGGGTCAGAA TCGAGCGAGC CGGTTGTAAC GACCATCACG
GTCACACCGA CCACGCCCAC GCTCGCGGTC GACGAGACTG AAGCGTTCAC GGCAACCGTT
CTCGACCAGG ACGGCGTGAC CATGACCGGC ATCGATGTCG AATGGGCGAG CAGCAACGAG
ACCGTCGGCA CGATCGACGC GGACGGAGTC TTCACCGCCC TCGCCGAAGG CACGGCGGAC
GTCACCGCAA CGGCGGAGGG CGTAACCGGA GAAGCTACCG TCACGGTCAA CGGCGAAGAG
CCGACCGACC CGGCTGCAAC ACGCATCGAG ATCACACCGA CCACGGCCAC GCTCGCGATC
AACGGGACGG TGGAGTTCTC CGCAATTGTC TTTGATCAGT TCGACGAAGA AATGTCGGAG
GTTGCGGTCG AATGGGCGAG CAGCGATGAG ACCGTCGGCA CGGTCAGTAC GGAGGGTGTC
TTCACCGCTC ATGCTGAGGG CACGGCAGAC GTCACGGCAA CGGCAGGCAA CGCAACCGAA
ACCGCAACCG TCACCGTCAG TGCCGAAGAG CTGGTCATCG ATCGCATCGA GGTCACATCG
ACCACAGCCA CGCTCGCGAT CGGCGAGACT GAAGCGTTCA CGGCAACCGT TCGCGACCAG
TTCGGCAGCG CCATGACCGG CATCGATGTC GAATGGGCGA GCAGCAACGA GACCGTCGGC
ACGATCGACG CGGACGGAGT TTTCACCGCT CTCGCCGAAG GTACGGCGGA CGTTACCGCA
ACGGCGGAGA ACGTAACCGG AGAAGCTACC GTCACCGTCA CCGCCGGAGC GACGGGTGAT
CCGACCGCAA CGCGGATCGA GATCACACCG CTCACAACCG CCGCCACGGT CAACGGGACG
GTAAACTTCT CCGCGACGGT CTATGACCAG TTCGACGCCG AACTGCCGGA GGCTGAGATC
GAATGGGCGA GCAGCAACGA GACCATCGGC ACGATCGACG CGAACGGTAC CTTCACCGCC
CTTGCCGCGG GTATAACGGC CGTCACTGCA ACGGCGGGCA ATGCATCCGC ATCGGCGCTC
GTCACCGTCA ACGAAGAAGA GCCGGCTGAA CCGGTCCTGG AGAGCATCCG GATCACACCG
CCCGAGGCCA CCCTCGCGAT CGGCGATACC CAGCTGTTCA TCGTGACCGC TCGTGACGAG
GACGGCGCCG TCATGACCGA CGTTGAGATC GCCTGGACGA GCAGCGATGA GACCGTCGGC
ACGATCGACG CAAACGGTAC CTTCACCGCC CTCGCCGAAG GCACGGCGGA CGTCACCGCA
ACGGCAGAGA ACGTAACCGC GACGGCGACC ATCACCGTCA ACGACGAAGA GCCGGCTCTC
GCCAGCATCG CTGTCGCACC ATCGGCAATC ACGCTCGCCG AAAATGACAC CGCGACATTC
ACCGCGACCG CTTTCGACCA GTTCGGCACC AGCATGACCG ACGTCGAGAT CAACTGGACA
GGCAGCGATG AGACCGTCGG GACCATCGAT GCGGACGGCG TCTTCTCCGC GGTTGCCGAC
GGCACGACGA CCATCACCGC AGCGGCAGGA AACATAACCG GGACCGCGGC GGTAACCGTC
ACCACGTCAA CCTCGGGCGT TGCGGTCTCC CCGTCGGCGA TCATCCTGGA CCTGGGGGAC
GAGTGGCAGT TCACCGCGAC CGTATATGAC CTGCAGGACA ACGCATCCGA TCCCACGGTG
AACTGGACAA GCAGCGACGA GGCCGTTGGC ACCATCGATG CCGACGGACT CTTCAGCGCG
CTTACCGAAG GCACAGCGAC CATCACCGCT ACTGCAGACA ACGAGACCGG GACCGCGACC
GTGACCGTCG AATCGTCGCA GGTCGCAACG CGGATCGAGA TCGAACCGCC CACGGCCACG
ATCCTGCCCG AAGAGACCCA AGCGTTCACG GCAACCGTCT TTGACCAGCG CGACAACGAG
ATGGACTGGA TCAGGGTAAC CTGGTCGTCC TCCAACCCTG AGGTCGGCAC GATCGACCGG
GCCGGCCTCT TTGGAGCGTT TGCAGAGGGA TCGACGGACG TAACGGCATC GGTAGGCGAC
GTGGCAGAAA CAGCAGCAGT CACCGTCTCG GCAACCGTTG CACCTGAACC CACCCCCGGC
AGCGGCGGCA GCGGTGGCAG CAGTGGCGGC GGTGACAGCA CTCCCTCCTT CTCCGCAGGG
ATACGTGAGA ACCTGAGAAG CGGCGAGACG TTCACCTTCT CGGATATCAG CGTCACATCG
GTCAGCAGCG TGAACGTCAC GGCAGCCAGC ACCATCCCGA AGATGATGCT GACCGTGAAG
AAGGCAAAAG CGTCCTCGGC TGCGGAGCCT CCCGCTGGCG ACGTCTACGA GTACATCGAG
ATCACCCCCC AATGGGTGAG CCAAAACCAG ATCGGCAACG CGACGGTATT CTTTAGCGTC
CCTGCCAACT GGCTTGAAAG CCACAACGCG ACCGCGGAGG ACGTTGTCCT CATGCGCTAC
GTCAACGGCA TCTGGGAGTC CCTGGAGACC GAAGTGATCG GCGAAGAGAA CAGCAAGTAC
AACTTCCGGG CAACCACCCC CGGGTTCTCC ATCTTCGCCA TCATTGCGTC ACCCGTGAGC
GTGATCGCAT CGGCGGAGGA GTTGAACATC ACAGCGGAAG TTACCGGGAC ACCTGAGGTT
ACCGGAAACG TAACGACGGA GCCGACCACC GTGCCGGCGA CGACACCTAC GGCACCGCTC
GTCTACGCGC CCCTCCTCGC ACCGCTGGCC TTCCTCCTCT GGGCGAGGAA GCGGCGCTGA
|
|---|
| Protein sequence | MTKHTYLALL CAVVIIGLLT SPVMAVEAAS GEEIYRPFVN AQERPDIDGD MIVWEDDRNG
NKDIYFGTVD EFRNKPPLTT TRVGERITSD DASQEKPSIS GDYIVWQDDR NGNWDIYLYQ
RSTGEETQLT TDTGDQWLPI VRGNYVAWYD DSSGDTKIVL YDIAAGAVKA TIDADAKTTI
PDGATGVKPA LSEKYVAWIE KADERAWYYD IADETKMQVS GTGLRHSWPS LYGSQIAWEC
YLNRSGIQDP EIYLMDLDNP SGGEQQITNA PNYQVSPALS ENIIAWEDMQ DGPRGIYMYD
LATGGEEMSV FAPEDIYDEQ LYPAASGNTI VWQRGTGINS NIYIFIYGSE SSEPVVTTIT
VTPTTPTLAV DETEAFTATV LDQDGVTMTG IDVEWASSNE TVGTIDADGV FTALAEGTAD
VTATAEGVTG EATVTVNGEE PTDPAATRIE ITPTTATLAI NGTVEFSAIV FDQFDEEMSE
VAVEWASSDE TVGTVSTEGV FTAHAEGTAD VTATAGNATE TATVTVSAEE LVIDRIEVTS
TTATLAIGET EAFTATVRDQ FGSAMTGIDV EWASSNETVG TIDADGVFTA LAEGTADVTA
TAENVTGEAT VTVTAGATGD PTATRIEITP LTTAATVNGT VNFSATVYDQ FDAELPEAEI
EWASSNETIG TIDANGTFTA LAAGITAVTA TAGNASASAL VTVNEEEPAE PVLESIRITP
PEATLAIGDT QLFIVTARDE DGAVMTDVEI AWTSSDETVG TIDANGTFTA LAEGTADVTA
TAENVTATAT ITVNDEEPAL ASIAVAPSAI TLAENDTATF TATAFDQFGT SMTDVEINWT
GSDETVGTID ADGVFSAVAD GTTTITAAAG NITGTAAVTV TTSTSGVAVS PSAIILDLGD
EWQFTATVYD LQDNASDPTV NWTSSDEAVG TIDADGLFSA LTEGTATITA TADNETGTAT
VTVESSQVAT RIEIEPPTAT ILPEETQAFT ATVFDQRDNE MDWIRVTWSS SNPEVGTIDR
AGLFGAFAEG STDVTASVGD VAETAAVTVS ATVAPEPTPG SGGSGGSSGG GDSTPSFSAG
IRENLRSGET FTFSDISVTS VSSVNVTAAS TIPKMMLTVK KAKASSAAEP PAGDVYEYIE
ITPQWVSQNQ IGNATVFFSV PANWLESHNA TAEDVVLMRY VNGIWESLET EVIGEENSKY
NFRATTPGFS IFAIIASPVS VIASAEELNI TAEVTGTPEV TGNVTTEPTT VPATTPTAPL
VYAPLLAPLA FLLWARKRR
|
|---|
| |