| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1158 |
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| Symbol | |
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| ID | 4847186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanoculleus marisnigri JR1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009051 |
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| Strand | + |
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| Start bp | 1141453 |
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| End bp | 1143714 |
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| Gene Length | 2262 bp |
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| Protein Length | 753 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640115847 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001047071 |
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| Protein GI | 126179106 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGAAAC TGCGAGACGA ATTACCGGGG AACCTTCTGG AGATACTGCA GGACGCTGCT
CCCGTCCTCG ACCGCCGGTC GCGGGAGAGG CTGGCGGCGG GCATCGAGGC CCTGATCGAC
GAGAACCGTG ATCTTGCCGT CCGTGCCGCC CGCGCAGGGC TGGAGCGCGA TGCCCTTCTT
GCCGCCGTCG GCAGGCAGGG GATCGTCTAC GACGCCGGCG GCGGGGTGGT CGCGGCGGGC
CCGGGCGAGG AGGATCGAAT TGCCCGGGCG CTCCTCGGGA GGCTGGACGT ATCGCTCGGG
TACCCCGGCG GCGAACCGGT TCCTCCCGGC GAACTCCCCG GGCACCGGGC GCTCAGGGGA
GAGAGGCTTG CATCCTGCCG CTACACCATC CACGATCCCG GCGGGGAAGA TCTTCATGCC
GTCGTATCCG CCTCGCCGAT CATCATGGAC GGGGCCGTCT CCGGCGCCAC TGTCACCTGG
CAGGACGTCA CCGGAGAGGA GCAGGCATGC CGCCGCCTCG CGGAGGCGAA CACCCTGCTC
GAGGGGCTCT TCGAGAACCT CGGCGATATC GTCGGCGTCC AGCGGCCGGA CAGGACGATC
CTGCGCTACA ATCGCGCCGG CTACGAGATG CTCGGGATGA CGCCGGAGGA GGTGGCGGGG
CGGAAGTGCT ACGACCTCCT CGGGAGGACG TCGCCCTGCA CGGTCTGTGC GACGGAGCTT
GCGGTCGCGA GCAGGAAGCG GGAGGTCGTG GAGAAGTTCG TGCCCGAACT CGGGCGGTAC
CTGGAGTGCC GCTCAAGCCC GATCCTGGAT GAGAAGGGCG AGGTGGCGTT CATCGTCGAG
CAGCTCTACG ACATCACCGA CCGGAGGCGT GCCGAGGACG AACTCCGGGA GAGCGAGGCG
ACGGCCCGGG CGCTCCTGAA CGCCCCGAGC GAGATGATCG TCCTCCTCGA CAGGGATGGC
AGGCTCCTCG ACACCAACGA GATGACGACA CGGCGGTTTG CGCGCAGCCG GGAGGATCTC
ATCGGCCGGA ACATACTCCA GTTCTTCGCG CCGGATGCGG CGGCGGTGTA CGCGGCACGC
CTCAGGGATG TCGTCGCGTC GGGCCGACCT GCACGGTTCG AGGACGCATG GGATGGGCGG
CTGTACGACG TCGTCCTCTA CCCGGCCGCC GACGAGCAGG GCAACGTCAT CCGGGTTGCG
GCGGTTGCAC GGGACGTCAC CGGGAAGAAG CGGGGGGAGG ATGCCCTGCG GAGGCGGACG
CACGACCTGA ACGAGCGGGT GAAGGAACTC TCGATCCTGT ATGAGATATC CCGGATCATC
GAGCGGCGAT CGGAGCCTTC GCTCAACGAG GTCTTCCGTG AAGTCGTCCG GGTTCTCCCC
TCCGGCTGGG AGTACCCGGA GGATACCGTC GCGAGGATCA CGGTGCACGG GCATCGGTTT
GCGACGGAAC GCTTCGCGGA GACGCCCTGG CGGCAGGTAT CTCCTGTCGT CGTCCGCGGG
GAGACGGTCG GGATGGTGGA GGTCTGTTAC CTCCACGAGA GGCCGGAGAG GGACGAAGGC
CCGTTCCTCG CCGAAGAGCG GGCGCTGCTC GATATCGTTG CCGGACGGCT CGGAAGCATG
ATTGAGCGGT TCCAGGCATG GGACTCCCTC GAGAAGAGCG AGTCGCAGTT CCGGGAGATC
ATGCAGCAGA GTTTCGATAT GATCTACACC TGCTACAACG AGGGCGGGAT CGCCTACATC
TCCCCGGCGG TGAACCGCAT CCTCGGCTAC ACGCCCGATG AGATCATCGG CAGGAGGTGC
CGGGACTTCG TCGTCCCCGG GTCGCTCCCC GCCTGGGAGG AGGGGCGAAC GAAGATTGCC
CGGGGCGAGC CGGTCGAGGG GCTCGAGATT GAGTTCCACC GGAAAGACGG ATCGGCGGCC
TGCCTCGAAC TGAACGAGTC CCCGATCGTC CGCGACCGGT CGGTGATCGG GGTGCACGTT
GTCGGCAGGG ACATCACCGA GCGGAAACAG AACGAACAAC TCCGGCAGCA TGCGTTCGAG
CAGATCGAAC GGAACATCGA GCAGTTCGCG ATCCTCGGCG ACCATATCCG CCAGCCGCTC
CAGGTGATCC TCGGGATGAG CGAACTCCTC GATGAACAGA AGGCCACGGG GAGGATCCGC
GAGCAGGTCC ACCGGATCAA CAGTTACATC ACGGATCTCG ACCGGGGCTG GATCGAGTCG
AGGCAGGTTC GGGAGTTTTT GCGGCGGCAC GAGCTGGCGT GA
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| Protein sequence | MEKLRDELPG NLLEILQDAA PVLDRRSRER LAAGIEALID ENRDLAVRAA RAGLERDALL
AAVGRQGIVY DAGGGVVAAG PGEEDRIARA LLGRLDVSLG YPGGEPVPPG ELPGHRALRG
ERLASCRYTI HDPGGEDLHA VVSASPIIMD GAVSGATVTW QDVTGEEQAC RRLAEANTLL
EGLFENLGDI VGVQRPDRTI LRYNRAGYEM LGMTPEEVAG RKCYDLLGRT SPCTVCATEL
AVASRKREVV EKFVPELGRY LECRSSPILD EKGEVAFIVE QLYDITDRRR AEDELRESEA
TARALLNAPS EMIVLLDRDG RLLDTNEMTT RRFARSREDL IGRNILQFFA PDAAAVYAAR
LRDVVASGRP ARFEDAWDGR LYDVVLYPAA DEQGNVIRVA AVARDVTGKK RGEDALRRRT
HDLNERVKEL SILYEISRII ERRSEPSLNE VFREVVRVLP SGWEYPEDTV ARITVHGHRF
ATERFAETPW RQVSPVVVRG ETVGMVEVCY LHERPERDEG PFLAEERALL DIVAGRLGSM
IERFQAWDSL EKSESQFREI MQQSFDMIYT CYNEGGIAYI SPAVNRILGY TPDEIIGRRC
RDFVVPGSLP AWEEGRTKIA RGEPVEGLEI EFHRKDGSAA CLELNESPIV RDRSVIGVHV
VGRDITERKQ NEQLRQHAFE QIERNIEQFA ILGDHIRQPL QVILGMSELL DEQKATGRIR
EQVHRINSYI TDLDRGWIES RQVREFLRRH ELA
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