Gene Memar_0884 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMemar_0884 
Symbol 
ID4848025 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanoculleus marisnigri JR1 
KingdomArchaea 
Replicon accessionNC_009051 
Strand
Start bp861888 
End bp864311 
Gene Length2424 bp 
Protein Length807 aa 
Translation table11 
GC content61% 
IMG OID640115570 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_001046799 
Protein GI126178834 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00331872 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAGCGC CCCCAGAAAC TCCACGGAGG AAGCCTGATC CCGCCGGGCG GGATGAGGTT 
CCACAGGAGA ACCCTGCAGA GACCGAACGG CTCGCCGAAG AGCGGATCAG TGAACTCCAG
GTAGAGATTG ATACCCTTCG CCGGGAGAAT GAAGAACTCA GGCAGGCCGA GACCGAATGC
AGGAGAGACG AAGAGGCGCT GCGCCGGGAG AAGGATAGGG TGGGTGCCAT CCTCTCCGCC
CTCGATACGG GGCAGTCCCT TGTCGACCCG GATATGACGA TCGTGTGGGT CAACCAGGAG
GCCCGTGACA TACTTCCCGA ACAGGAGCCC GTCGGCCAGA AGTGTTACCG CTATTTCGAA
AGCCTGAACG AACCGTGCGA AGTGTGTGCA GCACGGCGCG TCTTTGCAAC GGGCGAGGTT
GCAAGAGTAG AGAAGTGCGT CTCGCGCCGT GGGCGCTGGA TGAATATCGT TGCCCAGCCG
GTGAAAGATG CATCCGGCCG GGTAACACAT GTTCTCGAGA GTTTCACCGA CATCACCGAG
CAGAAGCAGG CGGAAGAAGC CCTGCGGGAG AGCGAGGCCA AGTACCGAAC CCTGGTGGAG
ACCGCTCTCG ACATCGTCCT CATTCACGAC AGTGAGAAGA TCCTCTACAT CAATCCAACC
GGGGTGAACC TTCTTGGCGC ATCCAGTCCG AACGAGATCC TCGGCAGGAA CTTCCTCGAG
ATCATTCATC CCGACTTCCG CGACCGCATC CGGAAGAACG CTGCGATGGA TCTCCTGGGC
GAACCTTCGC CAACCACCCA GCTCCAGCTC CTCCGGCTGG ATGGAACCCC CTTCTGGGTG
GAGGGGAAAG GGGTCATGAC CTACATTGCC GGCACCCCTG TCGTCCAGGT GATCATGCGG
GACATCACCG GGAGAAAGCA GATGGAGGAT GCCCTCCGGG AGAGCGAGGA GCGGTACCGT
TCCCTTGTCG AGCTCATGCC GGATGCCGTG GTCGTACACC GGGACGGCAT CATCGTGTAC
GTGAATCCTG CCTGCGTCCG GATTGCGGGC GCGAAGAGCC CCGAAGACCT CGTGGGCAAA
CCGCTGGATC TCTTCGTCTC CCCCGAATAC CGCGAGCGTA TCGCCGGGCA TATCCGCCGG
ATGGAACAGG AAGGCACGGC GACCCCATTG GTCGAACAGG AACTCAGGAC CCTCGACGAC
CGGACGATTC AGGTCGACAT CACGGCGACC CCCATACTCT ACCAGGGCCA GCCTTCTATC
ATGGTTGTTT TCCGGGATAT CGCCGAGCGC AAGCAGGTTG AGGCGAAACT CCGCGCCGTC
ATGGAAAGAG AGCATTTGAG AGCTACCGAA CTGGATGCGA CACTTGCCTC GATCGCATCG
GGCGTCATCA TCTACGATAC TACCGGGGCT ATTGTTCGGG TGAACGAAGC GGTGCGTAAG
ATGATCGGCA GAACGTCGAT GTCCCTTGAT CCAGTCCGTT TCGAGGAGCG CCAGGCGGGT
TTTGGGGTTC TGCGGCCGGA TGGGACGCCG CTCTCCCTCG AGGCGACCCC ATACTACCGG
GCGCTGCACG GAGAGACCGT GCAGGGAGAA GAGGTGATGG TTACCCGCCT GAACCGGGAA
CCGCTCTGGG TGGACACGTC AGCGGCCCCT ATCCGCGATG CCGGCGGTAC TATCGTCGGA
GCCATTGCCA TCCTCACGGA TATCACCGGG CGCAAACGTG CGGAAGAAGC GCTCATACGC
CATACTGAAG AACTCACCCG GCTTCACCGC GAACTGGAGG CCGCGAATCG GGAGGCGAAC
CTCTACCTGG ACATCCTCAC CCACGATATC GGCAACACCG AGAACGTCTC GAACCTCTAC
GCCGAACTGC TCATCGAGTC CCTGGAGGGA GAAGCAGCTG AATACATTAA GAAACTGCAG
AGCAGCGTCC AGAAGAGCAT CGAGATCCTG GGCACCGTCT CAACCATCCG CCGGATTTAT
CAGGCTTCAC CGGATCTCAA ACAGACCGAT CTCAACAGGG CAATCCAGGG AGCGATCGAG
GGGTCCCCCA CCAGCGTCAT CTACCATAAC GGGGCCTGCC ATCTGGTCCT GGCGGACGAC
CTGCTCCCCG TGGTCTTCAA CAACCTCATC GGCAATGCCG TCAAGCACGG CGGTCCTGAC
GTCGAAGTCG CGGTCCGGGT TGAAGAGCAG GGCGACGAAG TGCTGGTGAC GGTCGAGGAT
ACCGGTCGGG GCGTGCCGGA TGAGGACAAG GAGGCAATCT TCCACCGCTA CGAGCAGCAA
AAACGCGGCG TCGGCGAAGG TCTCGGACTT TACCTCGTGC AGATCCTGGT GGAGCGCTAC
GGAGGACGGG TCTGGGCCGA TGACCGGGTG CCGGGCCGCC CCGGGAAAGG AGCGGCGTTC
CGGTTTACCC TGAAGAAGGC ATGA
 
Protein sequence
MPAPPETPRR KPDPAGRDEV PQENPAETER LAEERISELQ VEIDTLRREN EELRQAETEC 
RRDEEALRRE KDRVGAILSA LDTGQSLVDP DMTIVWVNQE ARDILPEQEP VGQKCYRYFE
SLNEPCEVCA ARRVFATGEV ARVEKCVSRR GRWMNIVAQP VKDASGRVTH VLESFTDITE
QKQAEEALRE SEAKYRTLVE TALDIVLIHD SEKILYINPT GVNLLGASSP NEILGRNFLE
IIHPDFRDRI RKNAAMDLLG EPSPTTQLQL LRLDGTPFWV EGKGVMTYIA GTPVVQVIMR
DITGRKQMED ALRESEERYR SLVELMPDAV VVHRDGIIVY VNPACVRIAG AKSPEDLVGK
PLDLFVSPEY RERIAGHIRR MEQEGTATPL VEQELRTLDD RTIQVDITAT PILYQGQPSI
MVVFRDIAER KQVEAKLRAV MEREHLRATE LDATLASIAS GVIIYDTTGA IVRVNEAVRK
MIGRTSMSLD PVRFEERQAG FGVLRPDGTP LSLEATPYYR ALHGETVQGE EVMVTRLNRE
PLWVDTSAAP IRDAGGTIVG AIAILTDITG RKRAEEALIR HTEELTRLHR ELEAANREAN
LYLDILTHDI GNTENVSNLY AELLIESLEG EAAEYIKKLQ SSVQKSIEIL GTVSTIRRIY
QASPDLKQTD LNRAIQGAIE GSPTSVIYHN GACHLVLADD LLPVVFNNLI GNAVKHGGPD
VEVAVRVEEQ GDEVLVTVED TGRGVPDEDK EAIFHRYEQQ KRGVGEGLGL YLVQILVERY
GGRVWADDRV PGRPGKGAAF RFTLKKA