| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_0881 |
|---|
| Symbol | |
|---|
| ID | 4846508 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | + |
|---|
| Start bp | 859704 |
|---|
| End bp | 860870 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640115567 |
|---|
| Product | aminotransferase, class V |
|---|
| Protein accession | YP_001046796 |
|---|
| Protein GI | 126178831 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | [TIGR01977] cysteine desulfurase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0070311 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGATA ATCCGCCGAT CATCTACTTG AACAACGCCG CCACGACCTG GCCGAAACCC
CCGGAGGTGC TCGAGGCTGT CAGGCAATCG CTTGCGCTCC CGGTCTTCGG GTCGGGAAGG
ACCACCGGCA GCCAGGGCGA GGACTACATC ACGCTGGCAC GGGAAGCGCT CGCGGACCTC
CTCGCCGCAG ATCCGCCGGA GCACGTGATC TTCACCCAGA ACGCGACCGA TTCCTTAAAT
GTCCTCATCG GGGGATTTCT TGCCGGAGAG ACCGGGTGCC ACGTCCTCAC GACCGAGCTC
GACCACAACT CCGTTCTGCG GCCGCTTCAC GAACTCGAGC GGCAGGGCCG CATCCGGCTG
ACGGTTCTCC CCTTCGAGAA CGGCTCCGTC AGTCCCGATG CCGTTCGCGC GGCCATCACG
CCCGATACCC GGCTGATGGT CACGGCCCAC GGGAGCAACG TGCTCGGCTC CGTACAGGAC
GTTGCCCGGA TCGGGGAAAC CCTGCACGAT CACGGGGTCT ATTTTATCGT TGACGGAGCG
CAGACCGCCG GCCACATCCC CGTCGATCTT GGAAACCTCC CGGTAGACGC CTACGTCTTC
ACCGGCCATA AGGGCCTCCT CGGTATCCCG GGCACCGGCG GATTCTACCT GCGGGACCCG
GAATCGATCG CACCCCTCCG TTACGGGGGG ACCGGGACGG ACTCCTTCTC GCTCTTCCAG
CCCCGGGAGA TGCCGGAGCG GTTCGAGGTC GGAACGCATA ACTATCCCGG CCTTGCGGCC
CTCGCCGCCG GGGTGAACTA CATCGCAGCT ATCGGGGTAG AGGCCGTCGC AGAGAAAGCG
GAGCGCCAGA CTGCGTTCCT TATCGGGGAG TTGAAGGAAG AGCCCAACAT CATGGTCTAC
AACGAGTCGC CCGTCCTTCC CATCGTCTCC TTTAACATCC GGGGGATGGA GAACGACGAC
GTTGGGTTCA TCCTCGCCCG TGCCTACGGG ATCGTCGCCC GCACGGGGCT GCACTGTGCG
CCCCTCGTAC ACCGGGCGAT CGACGGCGGG AGAGGCTCCG TGCGGCTCAG CCTCTCCTGG
TTCACCACGG ACGAAGAGTG CCGGACCGCC GCAAGAGCAG TAAAGGAGAT TGCACGAAAT
GCGAATTCTT CGCTCGGTTC GCCATAA
|
|---|
| Protein sequence | MGDNPPIIYL NNAATTWPKP PEVLEAVRQS LALPVFGSGR TTGSQGEDYI TLAREALADL
LAADPPEHVI FTQNATDSLN VLIGGFLAGE TGCHVLTTEL DHNSVLRPLH ELERQGRIRL
TVLPFENGSV SPDAVRAAIT PDTRLMVTAH GSNVLGSVQD VARIGETLHD HGVYFIVDGA
QTAGHIPVDL GNLPVDAYVF TGHKGLLGIP GTGGFYLRDP ESIAPLRYGG TGTDSFSLFQ
PREMPERFEV GTHNYPGLAA LAAGVNYIAA IGVEAVAEKA ERQTAFLIGE LKEEPNIMVY
NESPVLPIVS FNIRGMENDD VGFILARAYG IVARTGLHCA PLVHRAIDGG RGSVRLSLSW
FTTDEECRTA ARAVKEIARN ANSSLGSP
|
|---|
| |