Gene Memar_0564 details

Gene Information

• Locus tag: Memar_0564
• Symbol: rpl3p
• ID: 4846962
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanoculleus marisnigri JR1
• Kingdom: Archaea
• Replicon accession: NC_009051
• Strand: +
• Start bp: 549452
• End bp: 550465
• Gene Length: 1014 bp
• Protein Length: 337 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 640115246
• Product: 50S ribosomal protein L3P
• Protein accession: YP_001046479
• Protein GI: 126178514
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03626] archaeal ribosomal protein L3

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.415651
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGAAGA TAAACAGACC ACGCAGAGGA TCCCTCGCAT ACAGCCCGAG AAAACGGGCA 
AAAAGCCCGG TTCCGCGCTA CGGCTCATGG CCGGAGTACA CGGGAGCCCC GGCCGTGCAG 
GGATTCGCAG GGTACAAGGT GGGAATGACC CACGTCATCA TGGTCGATGA CCACAAGAGC 
AGCCCCACCG AAGGCAAGGA CGTGATGGTG CCGGTGACCG TGGTTGAGGT TCCGCCCATG 
CGGGTGGCCG GCGTGCGCGC ATACGGTGAA GATACCTACG GAAAGCACGC GCTGACCGAA 
GCGTGGACGA CCGATCTCGA CGAGGAATTG TCCCGCCGGA TCAACGTCCC GAAGAACCAC 
GACACCGCCG CTGCCCTCGA AGCCGTCAAG GCTGCCGTCG GCGAAGGCAA GGTCTCGGAA 
CTCTACGCTC TGGCCTACAC CCGGCCGATG GAGCTCACCG GCGTCCCGAA GAAGGTCCCC 
GACCTGATGG AGATGCGGAT CGCCGGCGGA AGCCTCGAAG ACCAGATCGC CTACGCTGCC 
GAGATCCTCG GAAAGGAGAT CACGATCTCC GGGAACCTCG AGGTCGGCGA GTACGTCGAC 
GTGACCGCCG TCACCACCGG TAAGGGCACG GAAGGTCCCG TCAAGCGGTG GGGCGTCCAG 
GTCCGGAAGC GGAAACATTC CCGCGGCGGC AAGAAACGGC ACATCGGCAA CCTCGGTCCC 
TGGCATCCGC ACCACGTCAG GTGGCAGGTG CCCCAGATGG GCCAGATGGG TTACCAGCAG 
CGCACCGAGT TCAACAAGCG GATCTTAAAG ATCGGCGCCG ACGGCGACGA GATAACGCCG 
GCAGGCGGGT TCCTGCACTA CGGTCTCGTG CGCGGGCCCT ACGTGCTGAT CAAGGGTTCC 
GTCCCGGGGC CGAACAAGCG GCTGGTCCGG ATACGGTCCG CGATACGGCA GGGTGAACAC 
ACCGTTCGCA CGCCGGCGAT CAATTTCGTC AGCGTGCAGA GCCAGCAGGG GTGA 

 

Protein sequence

MPKINRPRRG SLAYSPRKRA KSPVPRYGSW PEYTGAPAVQ GFAGYKVGMT HVIMVDDHKS 
SPTEGKDVMV PVTVVEVPPM RVAGVRAYGE DTYGKHALTE AWTTDLDEEL SRRINVPKNH 
DTAAALEAVK AAVGEGKVSE LYALAYTRPM ELTGVPKKVP DLMEMRIAGG SLEDQIAYAA 
EILGKEITIS GNLEVGEYVD VTAVTTGKGT EGPVKRWGVQ VRKRKHSRGG KKRHIGNLGP 
WHPHHVRWQV PQMGQMGYQQ RTEFNKRILK IGADGDEITP AGGFLHYGLV RGPYVLIKGS 
VPGPNKRLVR IRSAIRQGEH TVRTPAINFV SVQSQQG