| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_0551 |
|---|
| Symbol | |
|---|
| ID | 4846965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | + |
|---|
| Start bp | 532337 |
|---|
| End bp | 533860 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640115232 |
|---|
| Product | thymidine phosphorylase |
|---|
| Protein accession | YP_001046466 |
|---|
| Protein GI | 126178501 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0213] Thymidine phosphorylase |
|---|
| TIGRFAM ID | [TIGR02645] putative thymidine phosphorylase
[TIGR03327] AMP phosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000734459 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGA CTGTGAAACT GCTCGACATC GAAAACCGGG GGGTTCTCCT CCACTGCACC
GATGCACGGA GCATGCGGGT TCGCGACGGC GACCGCGTCC AGATCGTCGA CGAAGCGACC
GGAAAGACTG CCCAGGCTCA CGTCGACACC ACCGGTTCGC TCATCGAGCC GGGCGTCATA
GGCGTCTACC GGCCGGTGAA CGCCACGCTC GCCGTCGACG AGGGAACTCC CGTCGAGGTC
CGCGGCGCCG AGCGGCCGGC ATCCCTTGAG CACATCAAGA AGAAGATGGA CGGCGGCCGG
TTCACCAAAG ACGATACCGT GGATATCGTC AGGGACATCG TCGACGACGT CCTCTCGCCC
GGCGAGATCA CCGCTTACGT CACCGCTTCC TACATCAACG GCCTCGACAT GGACGAGGTG
GAGTACCTGA CGAGGGCCAC GGTCGAGACC GGAGAACGCC TCCACTTCAC CCGGCACCCC
ATCGTCGACA AACACTCCAT CGGAGGTGTC CCGGGAAACA AAATCACGCT CCTGATCGCC
CCGATCATCG CCGCGAGCGG TCTTTTGATC CCCAAGACCA GCTCCCGCGC CATCACCGGC
GCAGGGGGAA CCGCGGATCT CATGGAAGTC CTCGCGCCCG TCTCGTTCCC GGCGCTCGAG
GTGCAGCAGA TGACCGAGAA GGTCGGCGGC GCCATCGTCT GGGGCGGTGC CACGAACATC
GCCCCCGCCG ACGACAAGAT CATCACTTAT GAATACCCAC TCCGGATCGA CGCCCGTGGC
CAGATGATCG CGAGCGTCAT GGCAAAGAAG TTCGCCGTCG GCGCCGACCT CGTGGTCATC
GATATTCCGG TCGGCCGGAA CACCAAGATC GCGACTGCCC AGGAGGGACG GAAACTCGCC
CGGGAGTTCA TCGATCTCGG GGAACGGCTC GGGATGCGGG TCGAGTGTGC GTTAAGCTAC
GGGGAGTCGC TCGTCGGCCA CACCATCGGC CCGAACCTCG AGGTGCGCGA GGCGCTCGCC
GTCCTCGAGG GGGCGACCGA GCCGAACTCC CTGATCCAGA AGAGCCTCTC CCTCGCCGGG
ATCGCGCTCG AGATGGCCGG GAAGGCCGGG CCGGGGCAGG GTGCCCGGGC GGCCGCCGAT
ATCCTCCGGA GCGGCAAGGC GCTCGAGAAG ATGCGGCAGA TCATCGAGAT CCAGGGTGGT
GATCCGAACG TAAAGGCCGA GGATATCGTT CCGGGAGAGT GCAGGTTCGA TGTAAATGCG
CCGCAGGATG GTTACGTCAT CGAACTGAAC AACAGCGCTC TCGTCACGCT CGCCCGGCTC
GCCGGTTCGC CCTATGACCA CGGCGCGGGC CTGCTCGTCC ACGCAAAGAA AGGAACCCGG
GTCCGGAAAG GCGATCCCAT CTTCACCATC TACGCCGACC GCGAATGGCG GCTCGAGCGT
GCGATCGAGG TCGGCCGGAC GCTGATGCCG GTGCTTGTGG AAGGTATGGT ACTTGAACGT
ATCCCTCATG AACGGTGGGT GTAA
|
|---|
| Protein sequence | MKLTVKLLDI ENRGVLLHCT DARSMRVRDG DRVQIVDEAT GKTAQAHVDT TGSLIEPGVI
GVYRPVNATL AVDEGTPVEV RGAERPASLE HIKKKMDGGR FTKDDTVDIV RDIVDDVLSP
GEITAYVTAS YINGLDMDEV EYLTRATVET GERLHFTRHP IVDKHSIGGV PGNKITLLIA
PIIAASGLLI PKTSSRAITG AGGTADLMEV LAPVSFPALE VQQMTEKVGG AIVWGGATNI
APADDKIITY EYPLRIDARG QMIASVMAKK FAVGADLVVI DIPVGRNTKI ATAQEGRKLA
REFIDLGERL GMRVECALSY GESLVGHTIG PNLEVREALA VLEGATEPNS LIQKSLSLAG
IALEMAGKAG PGQGARAAAD ILRSGKALEK MRQIIEIQGG DPNVKAEDIV PGECRFDVNA
PQDGYVIELN NSALVTLARL AGSPYDHGAG LLVHAKKGTR VRKGDPIFTI YADREWRLER
AIEVGRTLMP VLVEGMVLER IPHERWV
|
|---|
| |