| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_0548 |
|---|
| Symbol | |
|---|
| ID | 4846968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | - |
|---|
| Start bp | 527553 |
|---|
| End bp | 528383 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640115228 |
|---|
| Product | xylose isomerase domain-containing protein |
|---|
| Protein accession | YP_001046463 |
|---|
| Protein GI | 126178498 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0648] Endonuclease IV |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000681576 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGAGT ACAATCTCGG CTGCACCGTG CGCATCGACG ACGAAGGGAC GCTTGCCCTG
CTCGCGGGGC TCTACGAAGA GGGCGCAATC CGTCATATTC AGGTGCAGGC CGTCCCCCTG
GCCCGGCAGT TCTTCCGCGA ACGCCTCGAC CGGATCGCCG CGTCCGGCAT CCCGGTCGTC
GTCCACGCAC CCCACCACGG CCACGGCGTC AACCCCTGCG CTCCCGCCGC CTACGACGAC
CGCCCGCTCG CGGTGATCAA GGCGTATATC GAGGAGGCGA TGAGCCGGAC GCTTGAGGCC
GCCGACACCC TCGGCGCAGA GACGATCGTC CTCCACGCAG GCCGGTACGA ACCCGGAGGC
CGCTCTGCCG CCGAGGATAC GTTCGCCGAC TTCCTCGACC GCAACGCCGA TCCCCGCCTC
ACCCTCGAAA ACCTCCCCGC CGTCTACGCC GGCTACCCTC TCCTCGGCAA CACCGCCGAA
GACCTCGCGG CGCTTGCAGG CAACAAAATC ACCCGGTTCT GCCTCGACTT CCCCCACCTC
GCCTGCACCG CAAACTACCG GCATCTCTCG TTTGCAGAAG AGCTGGAACG GTTCGAAGGC
CTCAACGTGG CCCTCCACCA CCTCTCGAAC ATACGATGCG GCTCGATCAC CGACGAGCAC
CTCGAACTCG ACCGTCCCGA CGGCGGCCTC GATCTCGCGG CGGTCTTTGC CCGGCTCCGG
CGGCACGCCG GCGTGCCGAC GACGCTCGAG TACAAGGAGG ACTCGGCGGA CGTCTACGCC
CGGCAGGTGA AGGTCTTTGC CGGGCTCTGG GAAGACCGTG CCGGGGAGTG A
|
|---|
| Protein sequence | MVEYNLGCTV RIDDEGTLAL LAGLYEEGAI RHIQVQAVPL ARQFFRERLD RIAASGIPVV
VHAPHHGHGV NPCAPAAYDD RPLAVIKAYI EEAMSRTLEA ADTLGAETIV LHAGRYEPGG
RSAAEDTFAD FLDRNADPRL TLENLPAVYA GYPLLGNTAE DLAALAGNKI TRFCLDFPHL
ACTANYRHLS FAEELERFEG LNVALHHLSN IRCGSITDEH LELDRPDGGL DLAAVFARLR
RHAGVPTTLE YKEDSADVYA RQVKVFAGLW EDRAGE
|
|---|
| |