Gene Memar_0420 details

Gene Information

• Locus tag: Memar_0420
• ID: 4845976
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanoculleus marisnigri JR1
• Kingdom: Archaea
• Replicon accession: NC_009051
• Strand: +
• Start bp: 404597
• End bp: 406606
• Gene Length: 2010 bp
• Protein Length: 669 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 640115095
• Product: DEAD/DEAH box helicase domain-containing protein
• Protein accession: YP_001046335
• Protein GI: 126178370
• COG category: [R] General function prediction only
• COG ID: [COG1202] Superfamily II helicase, archaea-specific

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGTCA TCGTCCAGCC CCAGAAGGGC ACGTATAAAC TGTTGTTCGT TGAAGGCGGC 
CGTGTCGAAG GTTCGGGGTT CGTCGACCTG GCTGCGACCC CGAAGGGCCG GCGGCCGAAG 
AACTTCAAGA TGCGCCGGCG CGGCAAACAG CTCAAGCCAA CCCCGACCCG GGACCTGATC 
ACGCTGTTGC GCCGGTCATC TGTTCTCCTT GCGGCGAAGA GCCCTGAGTT CGAGTCGTTC 
CTTGCCGATC TTCAGATCCC GTCATCGAGG ATCGACATCT GCCGGTTCTG CCAGCTCGAG 
GACCGGTTCG CGCCGGTCGA CAAGGCGACC GGCGTCCGGT ACGGCGGGGA GTGGATCTGC 
ATGGAGTGCG CAAAGCGCGA GATGCGCCGC GAGCTCGGTT ACCTGGGGAA GTTCGGCGGC 
TCGGTGCTTG TTCATCTTGA GAAACTCCTC GCCCAGATCC GGGACCTCGA CCGGGTGCTG 
GCGTCGGTGG GGCCCGATCA CCCCGACCGG AAGCGAACGC TCTTTGACCG GCTCGAGGCG 
CACGAGGTTC AGAAAACCGC CCATATCACC GATCTTCCGC TCCCTCCCGC GTTTGCAAAG 
GCAGCCGGGG TCGAGTACCT GATGCCCGTC CAGCAGCTCG CCGTTCAGAA CGGCCTCCTC 
GAGGGGCAGC ACCTCCTGGT CGTCTCGGCG ACCGCGAGCG GCAAGACCTT CATCGGGGAG 
ATGGCCGGGA TGAAGAATTT CCTCGAAGGC CGGGGGAGGA CGCTCTTCCT GGTTCCGCTG 
GTCGCGCTCG CGAACCAGAA GTACCAGCGG TTCCGCGACC GCTACGGTCA CCTGGTCCGG 
GTCACCCTGC AGACCGGGGT GAGCCGTCTC AACCTCCCCG AGACCCGTCC GGCGGGCGAC 
CGGGACGTCA ACGCTCCCGT GGTGGTGGGG ACTTACGAGG GGATCGACCA CGCTCTCCGG 
ACCGGGCGAT CCGTAAAAGA CATCGGCACC GTCGTCATCG ACGAGGTGCA GATGCTCGAG 
GATCCGGAAC GCGGCCACCG TCTCGACGGG CTGATCGCCC GGCTCAAGCA CATCGCGCCC 
GAGGCGCAGT TCCTCTACCT CTCGGCCACG ATCGGGGCTC CGGGACTGCT CGCGGAGAAA 
CTCCGGGCAA ACCTTGTCCG CTACGCGGAC CGGCCGGTTC CGCTCGAACG CCACCTCATC 
TTCATCGAGC GAAACAAGAA GATCGGGTTC ATCAAGCAGA TGGCCGCCGA GGAATACAAA 
GTACGGTCGT CGAAGGGCTA CCGGGGCCAG ACGATCGTCT TCACGAACTC CCGGGCCCGC 
TGTCATGTCA TTGCCGACGC CCTTGGAACC AAGGCCGCTC CCTATCACGC GGGGCTGACC 
TCCCAGGAAC GCCGGGACGT GGAGCGGCGG TTCACGAACG GGGAGATCTC TGCTGTCGTG 
ACCACGGCGG CGCTTGCCGC AGGCGTCGAT TTCCCGGCGT CCCAGGTGAT CTTCGATGCG 
CTTGCGATGG GCATTCAGTG GCTCACCGTC CAGGAGTTCC ACCAGATGAT GGGCCGGGCG 
GGGCGGCCGG ATTTCCACGA CCTCGGCCGG GTGGTCATCC TGGCGGAGCC CGGCGGATCC 
TATTCCCGGA CGTCCGGCAA GACCGAGGAA GAGGTCGCCG TCGGCCTCCT GCGAGGCGAG 
ATGGAGGAGG TCGCGCCCGA GTACGACATG GAGCAGAGTA CGGAGGAGTT CGTCGCGAAC 
GCCGTGGTCT CGAACGGCGA CGAGCAGCAG GTCATCAAGA TGAACCGGAC GATGGTCGGG 
ACGCTGGAGC CCGCCCTCCC CACGCTCCTC GACTACGGGC TGGTCCGGCG GCGGGGTGGG 
CGTATCGAAC TCACCGATAT GGCCCGGGTG ATGGCCGAAC ATTTCATCGG CGCCGAGCGG 
TTGATGGAGA TCATGGATCT CGTCCGACGC ATGGACGATG CGGCCGAAGT CGTCGCGGAA 
CTCGAGTGCG CCGAGGAGAA GACGCCGTAG 

 

Protein sequence

MKVIVQPQKG TYKLLFVEGG RVEGSGFVDL AATPKGRRPK NFKMRRRGKQ LKPTPTRDLI 
TLLRRSSVLL AAKSPEFESF LADLQIPSSR IDICRFCQLE DRFAPVDKAT GVRYGGEWIC 
MECAKREMRR ELGYLGKFGG SVLVHLEKLL AQIRDLDRVL ASVGPDHPDR KRTLFDRLEA 
HEVQKTAHIT DLPLPPAFAK AAGVEYLMPV QQLAVQNGLL EGQHLLVVSA TASGKTFIGE 
MAGMKNFLEG RGRTLFLVPL VALANQKYQR FRDRYGHLVR VTLQTGVSRL NLPETRPAGD 
RDVNAPVVVG TYEGIDHALR TGRSVKDIGT VVIDEVQMLE DPERGHRLDG LIARLKHIAP 
EAQFLYLSAT IGAPGLLAEK LRANLVRYAD RPVPLERHLI FIERNKKIGF IKQMAAEEYK 
VRSSKGYRGQ TIVFTNSRAR CHVIADALGT KAAPYHAGLT SQERRDVERR FTNGEISAVV 
TTAALAAGVD FPASQVIFDA LAMGIQWLTV QEFHQMMGRA GRPDFHDLGR VVILAEPGGS 
YSRTSGKTEE EVAVGLLRGE MEEVAPEYDM EQSTEEFVAN AVVSNGDEQQ VIKMNRTMVG 
TLEPALPTLL DYGLVRRRGG RIELTDMARV MAEHFIGAER LMEIMDLVRR MDDAAEVVAE 
LECAEEKTP