Gene Memar_0413 details

Gene Information

• Locus tag: Memar_0413
• Symbol: rpl1P
• ID: 4848417
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanoculleus marisnigri JR1
• Kingdom: Archaea
• Replicon accession: NC_009051
• Strand: +
• Start bp: 396561
• End bp: 397202
• Gene Length: 642 bp
• Protein Length: 213 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 640115088
• Product: 50S ribosomal protein L1P
• Protein accession: YP_001046328
• Protein GI: 126178363
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0081] Ribosomal protein L1

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.0692285
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTTGATA AAACCAGTAT ACAGGAAGCC GTGAAGACGG CCCTCTCAAA GGCTCCGGAA 
CGGAAGTTCA AGGAGAGCGT GGATATCACC GTCAACCTCA GGAATATCGA TATGTCCCAG 
CCCAAGAATC GTATTGATGA GACGATTCAT CTCCCGAACG GTTTTGACAA CGTCAAGATC 
GCAGTTCTCG GGAAGGGCGA CATTGTCACC CAGGCAAAAG AGGTGAATGT GGACCTCATC 
ATCGGACCTG AGGAGATCGA GCGGCTCGGG GGAGAGCCCC GCGAAGCGCG CAAGGTGGCG 
GGTGAGTACC GGTTCTTCCT TGCCGAGACG GCAATGATGC CTCTCGTCGG GCGTTATCTC 
GGTGTCAGGC TCGGTCCGCG CGGACGGATG CCGATGCCGG TTCCGCAGGG AATGGATATC 
CGGCCCATCG TTCAGCGTCT GAGGAGCTCC GTGAAGATCC GGACGAAGGA CAAGAAGGTC 
TTCCACACGA AGGTCGGAAC CTCCGGCATG GAGCCCGAGC AGATCGCCGA GAACATCGAC 
GCCGTCCTTC ACAGGGTCGA GTCCGTCCTG GAGAGCGGAA CGATGAACAT CCACTCGGTG 
TACGTGAAGA CGACCATGGG GCCGGCAGTG AGGGTGATCT GA 

 

Protein sequence

MVDKTSIQEA VKTALSKAPE RKFKESVDIT VNLRNIDMSQ PKNRIDETIH LPNGFDNVKI 
AVLGKGDIVT QAKEVNVDLI IGPEEIERLG GEPREARKVA GEYRFFLAET AMMPLVGRYL 
GVRLGPRGRM PMPVPQGMDI RPIVQRLRSS VKIRTKDKKV FHTKVGTSGM EPEQIAENID 
AVLHRVESVL ESGTMNIHSV YVKTTMGPAV RVI