Gene Rsph17029_3978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRsph17029_3978 
Symbol 
ID4898815 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodobacter sphaeroides ATCC 17029 
KingdomBacteria 
Replicon accessionNC_009050 
Strand
Start bp1118845 
End bp1120296 
Gene Length1452 bp 
Protein Length483 aa 
Translation table11 
GC content70% 
IMG OID640114581 
Productprotease Do 
Protein accessionYP_001045828 
Protein GI126464715 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0104728 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGATGC CCACCCCGCG TTCCTCGCTG AAGGCCGTCC TGATCGCCAG CACCCTCATC 
ACCGCCGGTG TCGCCGGCAC GGCCCTGCCG CCGACGGCGG CCCGGGCCGA GGTGCCGATG
CAGGGCTATG CCGATCTCGT CGCCCGCGTC TCGCCCGCCG TCGTCTTCAT CGAGGTGACG
GCCAAGTCGA AGGAGTCCAC GCCGATGGCG GGCTCTCCCT TCGAGGAATT CCTCCGCCGC
TTCGGCGAGA TCGACCCGCA GTTCCGCATG CCGCAGGCCC CCGAGGGCGG GCAGGTCATG
CACGGGCTCG GGTCGGGCTT CCTGATCTCG CAGGACGGCA TCATCGTCAC CAACAACCAT
GTGGTCGAAA ATGCGACCGA CATGAAGGTC AAGCTCGAGG ACGGCCGCGA GTTCAAGGCC
GAAGTCGTGG GCACGGATCC GATGACCGAC ATCGCGGTGA TCCGGCTGAA GGATGCCAAG
GACCTGCCCT TCGTCGAGCT CGGCGACAGC GAGAAGCTGC GCGTGGGGGA TGCGGTGGTG
GCCGTCGGCA ACCCGTTCGG GCTGGGCGGC ACCGTGACCT CGGGCATCGT CTCGGCCATG
GGGCGCAACA TCAACTCGGG CCCCTACGAC GACTACATCC AGACCGACGC CGCCATCAAC
CGCGGCAACT CGGGCGGCCC GCTGTTCGAC ACCGAGGGCA AGGTCGTCGG CATGAACACC
GCGATCTTCT CGCCCTCCGG CGGCTCGGTG GGCATCGGCT TCTCGATCCC CGCGAACACG
GTCAAGGATG TCGTGGCCCA GCTTCAGGAC AAGGGTTCGG TCTCGCGCGG CTGGCTCGGG
GTCACGGTTC AGGGCATGAC TCCCGAGATC GCTCAGGCCA TGGGGCTTGA GGGGCGCGAC
GGGGCCCTCG TGGCCGAGGT GCAGCAGGGC AGCCCCGCCG ATGAGGGCGG TCTCGAGAGC
GGCGATGTCA TCACGGCGGT GAACGGGCAG GAACTGACGG AGCGGGCGAG CCTGCCTCGG
CTGATCGCGG CCATCCCGAA CGGCGAGAAA GCCCAACTCA CGGTCCAGCG CGATGGACGC
CAGCAGGAGA TGACCGTGAC GATCGGAGAA CTGACCCCCG ACCGGGCGCA GGTCGCCTCG
GCCGAGTCGC CCGAAGGGCT CGGCGGGCCG CTCGGCATCG AGGTCCAGCC GCTCGAGCCC
GCGCTGGCAC GCCAGCTGGG CCTGCCGGAC GGCGCCTCGG GCATCGTGGT GACGGCGGTC
GATCCGTCGG GGCCGAACGC CGACCGGCTC GCGCCGGGCG ACGTGATCCA GGAAGCGGCC
GGCCACCCGA TCGAGACGCC GCGCGATCTG GCCTCGGCAA TGCGCGAGGC GCGCGGCAAG
GGCGTGATGC TGATGAAGGT GCTGCGGCAG GGCAACCCGG TCTATGTGGG CGCCGAAGTG
GCCTCGTCCT GA
 
Protein sequence
MPMPTPRSSL KAVLIASTLI TAGVAGTALP PTAARAEVPM QGYADLVARV SPAVVFIEVT 
AKSKESTPMA GSPFEEFLRR FGEIDPQFRM PQAPEGGQVM HGLGSGFLIS QDGIIVTNNH
VVENATDMKV KLEDGREFKA EVVGTDPMTD IAVIRLKDAK DLPFVELGDS EKLRVGDAVV
AVGNPFGLGG TVTSGIVSAM GRNINSGPYD DYIQTDAAIN RGNSGGPLFD TEGKVVGMNT
AIFSPSGGSV GIGFSIPANT VKDVVAQLQD KGSVSRGWLG VTVQGMTPEI AQAMGLEGRD
GALVAEVQQG SPADEGGLES GDVITAVNGQ ELTERASLPR LIAAIPNGEK AQLTVQRDGR
QQEMTVTIGE LTPDRAQVAS AESPEGLGGP LGIEVQPLEP ALARQLGLPD GASGIVVTAV
DPSGPNADRL APGDVIQEAA GHPIETPRDL ASAMREARGK GVMLMKVLRQ GNPVYVGAEV
ASS