| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_3892 |
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| Symbol | |
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| ID | 4899180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17029 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009050 |
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| Strand | - |
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| Start bp | 1023355 |
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| End bp | 1025007 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 640114496 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_001045743 |
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| Protein GI | 126464630 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.289685 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0243729 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACC GCCGCCCCTT CCTGCTTCGC GGAGCGGATC TTCTCGTCTC CACGCTGGTC
GATTGCGGCG TGACCCGGAT CTTCAGCCTG TCGGGCAACC AGATCATGCC GCTCTACGAC
GCCTGTCTGG GCTCGGGGAT CGAGATCGTC CATGTGCGTC ACGAGGCGGC CGCCGTTTTC
ATGGCCGAGG GCTGGGCGCA GCTTACGGGC GAAGTGGGCG TGGCGCTGGT CACCGCGGGC
CCGGGGGCTG CCAATGCGGT GGGGCCGCTG ATGAGCGCGC GCCAGTCCGA GACGCCGCTG
CTGCTCCTCA GCGGGGACTC GCCCCGGGCG CAGGACGGGA TGGGGGCGTT CCAGACCCTC
GATCAGGTGG CCGCGACCGC GCCCTTCACC AAACATTCCG CGCGCGTGGG CTCGGTGCCG
ACGCTGGCGC ACGAGCTCCG GGCGGCGCTG ACGCTGGCCC GGGCGGGGCG GCCGGGGCCG
GTGCATCTGG CGCTGCCGCA GGATCTTCTG ACCCAGCGCG CCGAGGGTGT GCCGAGCAGC
AGCCGGACCG CAGCCGCCAC GGTGCCGGCC AGCGAGCGCG AGACCGCGAG GCTCGCGGCC
GAGATCGCGG AAGCGCGCCG CCCGCTGATC GTGACGAGCG GCCTCTTCAG CCCGACCCGC
GGCGGCGATC TGGCCCGCAG GCTTGGTCAG AGGCTCGCCG TGCCGGTCGT GGCGCTGGAA
AGCCCGCGCG GCCTGCGCGA TCCGGCCCAG CCCGGCCTGC GGCAGCGGAT GGCCGACGCG
GATCTCGTGA TCTCACTCGG CAAATCCGTC GATTACATGC TCGACTTCGG TCGGGCCACC
TCCGCGGACT GCGGCTGGAT CGTGGTCGAG CCCGAGGACG GGGCGGGCGA AGAGGCCGTC
CGCAACCTCG GCCCGAAGCT GCGCCGCCTG ATCGCGGCCG ATCCGCGGGC GCTGGCGCAG
GGGCTGGCCG AGCTGCCCGA GGCCGGCTGC GACGCGGGAC GCCGCGACTG GTGCGCCCGC
TTCGGGCGCC GGCCCGCGCC GCCCGTGCTG GACGAGACGC CGGGGCCGAT CGATTCCGGG
CTGCTCTGCG CCACCCTGTC CGACGTTCTG GGCGCGGACG GGGGCGAGAC GATCCTCGTC
TCGGACGGCG GCGAGTTCGG CCAGTGGGCG CAGGCCCTCG TGCAGGCCGA CCGACGGCTC
ATCAACGGGC CCGCAGGCGG GATCGGCGGG GCGCTCGGTC ATGCGGTGGC GGCAAGCCTC
GCCTGCCCCG AGGCCCGCGT TGCGGTCGCC AGCGGGGATG GCAGCATCGG CTTTCATCTG
GCAGAACTCG AGACGGCGGT GCGCGCGGGC GCGGCCTTCG TGGTGGTGAT CGGCAACGAC
CGCCGCTGGA ATGCCGAGCA TCTGCTGCAG ATTCGCGAAT TCGGCCCCGA CCGCGTCCAT
GGATGCGAGC TCTCGGGCGC CCGTTACGAT CTGGTCGCCG CGGCCCTCGG GGGCACGGGC
GCCCATGTGA CATGCCGGTC CGAGCTTCGG GGCGCCCTGC GGCGCGCCTT CGCCGCCGGC
GGAGTGGTTC TGGTGAATGT GGAGATCGAG GGCCGCGCAG CCCCTTCCGG AGAGGAGCCG
GAAGCGGCGG AGACGGCGCA GCCCGACGGA TGA
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| Protein sequence | MNDRRPFLLR GADLLVSTLV DCGVTRIFSL SGNQIMPLYD ACLGSGIEIV HVRHEAAAVF
MAEGWAQLTG EVGVALVTAG PGAANAVGPL MSARQSETPL LLLSGDSPRA QDGMGAFQTL
DQVAATAPFT KHSARVGSVP TLAHELRAAL TLARAGRPGP VHLALPQDLL TQRAEGVPSS
SRTAAATVPA SERETARLAA EIAEARRPLI VTSGLFSPTR GGDLARRLGQ RLAVPVVALE
SPRGLRDPAQ PGLRQRMADA DLVISLGKSV DYMLDFGRAT SADCGWIVVE PEDGAGEEAV
RNLGPKLRRL IAADPRALAQ GLAELPEAGC DAGRRDWCAR FGRRPAPPVL DETPGPIDSG
LLCATLSDVL GADGGETILV SDGGEFGQWA QALVQADRRL INGPAGGIGG ALGHAVAASL
ACPEARVAVA SGDGSIGFHL AELETAVRAG AAFVVVIGND RRWNAEHLLQ IREFGPDRVH
GCELSGARYD LVAAALGGTG AHVTCRSELR GALRRAFAAG GVVLVNVEIE GRAAPSGEEP
EAAETAQPDG
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