Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17029_3047 |
Symbol | |
ID | 4899161 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17029 |
Kingdom | Bacteria |
Replicon accession | NC_009050 |
Strand | + |
Start bp | 56506 |
End bp | 59142 |
Gene Length | 2637 bp |
Protein Length | 878 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640113649 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_001044919 |
Protein GI | 126463806 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0864607 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.185142 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCCGC ATCCGCCCGC AGTCCTCGCC CATCGCCTGT CGGAAGGCCA GCGCCTCGCC ACGCCGCTCA TGCGGGCCCT GATGAGGGCG ACCGGCACCC AAGTGGACGC GGCCATCGCC CGCACCATCG CGGAACTCGG CGCTCACTGT GGCGCCGACC GGACGCGGGT CTACCGGATC GAGGCCGGGC AGGTGCTGGA CTGCACACAC GAATGGTGCA GGTCGGGGAT CTCGGAGATC CGGCCGGAGA TGCAGCGCAT TCCGCTCGGC ACGCTCGATC GCTGGATGCC GATCCTGCGC CGCGGCGAAC CGGTCGATGT GCCCGATCTG CACGGCCTGC CCGAGGACGA TCCGGCGAAG CAGCAGATGG CCCGGCACGG GATCCGGGCG CTTGTCCTGA TGCCCCTGAC CGATGGCACG GCGCTGACCG GCGTGGTGGG CCTCAGCCTC TTCAGGGCCC GTCGCCCCGT CGATCCGGCG GAGATGGCCC TCCTGCACTC CATCGCCGAG GCGATGGGTG CCGCCCTCGC ACGGCGGGAT GCCGAGCGCC GCGCCGTGGC GGCCCGCAGT GCCGCCCGCG ATGTGGCGCG CAACCTCGAA CGGCTGGCGC GCGTGACCGA GCTGATGACG AACCTTGTCA TCGTCACCGA CGTCGAGCAG CAGATCGTCT GGGTGAACCG GGCCTTCGAA CGCCAGACGG GTCACAGCCT CGAGGCGATC CGGGGCCGGA ACTTTGCCGA GGTGGTGCGC GGCCCCGGAA CGGATCCCGG CGTCTGCGCC GCCGTCGCCG AGGCGATCCG CACCTGTTCG AGCTGCGAGG GCGAGACGAT CAACTACACG GCCGCGGGCC AGCCCTACTG GATCCGCTTC AACGCCCATC CGCTGTCCGA CGCGGACGGG CGCTACGTCG GTCATGCGTC GGTCGAGACG GTCATCACCG ACCGCAAGGT GCTCGAGCGC GAGCTGGCCA CCCGCAACGC CTTTCTGACC GCCGTTCTGC AGACCAGCGT CTCGGCCATC GTGGCCCTGA ATGCAGAGGG CGGCATCGTC TATGCCAACG ACGAGGCCCG GCGGCTCCTC GTGCTGCAGC CCCATCGCGG CGGTCTCCGG ATGGAGGCGG TCCTCGAGAC GCTCGACGGC CGTCCGCTGC CCGAGGCCGA CATGCCCTCG GCCCTCGTGC GCGCCACCGG CGCGCCGCTG CACGACCTGC GCTATGCGAT CCGCCGCCCC GATGGCCAGT TCGGCATCCT GTCGATCAAT GCAGCCCCCC TGCCGCAGGC CGCCGACGAC GCGCGGATCG TGATCTCCGT CACCGACATC ACCCATGCCG AGGCCTCGGC CGAGCGGCTG CGGCGGCAGG CGGCGGAGGA CCCGCTGACC GGGCTCGCGA ACCGGCGCGC GCTCGCCGAT GCCGTCGAGA CCCGGCTGAC GGAGGCCGCT CCCTTCGCGC TGGTGATGCT CGACCTCGAC AATTTCAAGG CGGTGAACGA CCTGCAGCGC CACGACACCG GGGATGCGGT GCTGCGCATC GCGGCCGACC GGCTGCGGGC CGTGGCGGGG GCCGACTGTC TCGTGGCGCG GATGGGCGGC GACGAATTCA TGGTGCTGGC GCCCGGCACC GACGCCGCCA GTGCCCCGCG TCTGGCCGAG GCGCTGCGGG CCGCCATCTC GGCCCCGATC GAGGTCGGCC GCCAGCCGGT GCATCTGGCA GCCTCCGCCG GCATCGCGCT CCATCCCGAT CACGGGACCT CGATGGCGCT TCTGATGACA GGGGCGGACA TCGCGCTGCA TGCCGCCAAA CGCGCGGGGC GCAACCGCAG CGTCCTGCTC TCGCAGGCGC AATTCGCCGC CGAAGCCCGG CGCAGCGCCA TCACTCAGGC GCTGGCGGCC GACGTCGAGG CCGACCTGCG CCTCGTGTTT CAACCGCAGT TCAGGGCCTG CGGCGCCTTC GACGGGGCCG AGGCGCTCCT GCGCTGGACC GATCCCCGGC TGGGCGAGAT CGGACCCGCG GAGTTCATTC CCATCGCCGA GGAAGCGGGC CTCATCCAGC GCATCGACGC GCATGTGGCG GTGCTGGCCG CGCGGCAGCT CGGCCTCTGG GCGCGGCGTG GCTGGCGCCA CCGGCTCGCG GTCAATGCCT CGGCCCAGAC CTTCGCCCGC GCGGGCTTTG CCGAGGAGCT GCTGCAGCAC CTCGCGGAGG AGGATGTCTG CCCGCAGCAG CTCGTGGTCG AACTGACCGA GACGTCGCTC GCCACGCTCT CCTCGGTCGC GGACCACAAT ATCGCCACCC TGCGGCGCGC CGGCGTGGGC ATCGCCATCG ACGATTTTGG CACGGGCTAC GCCTCGCTCT CCTATCTGCA TCGGATCGAG GCGACCGAGA TCAAGATCGA CCGCGGCTTC GTGGCGGGCC TCGAGACGGC GGAGCGGCGC GACAGCAAGC CCCTGATTCA GGCGATCCTC AGCCTCGCGC ATGCCCTGGG CCTTGCCGTG ACCGCCGAAG GCGTCGAGAC CGAGCGGCAG CGGAGCTGGC TCTCGGCGGA GGGCTGCGAC CGGCTGCAGG GCTATCTGCT GGGTCGCCCC CTACCCGTCG AGGCCTTCGA GGCGGCCTTC GTGACGCCAG CCGCGGTTCC GGGCTGA
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Protein sequence | MIPHPPAVLA HRLSEGQRLA TPLMRALMRA TGTQVDAAIA RTIAELGAHC GADRTRVYRI EAGQVLDCTH EWCRSGISEI RPEMQRIPLG TLDRWMPILR RGEPVDVPDL HGLPEDDPAK QQMARHGIRA LVLMPLTDGT ALTGVVGLSL FRARRPVDPA EMALLHSIAE AMGAALARRD AERRAVAARS AARDVARNLE RLARVTELMT NLVIVTDVEQ QIVWVNRAFE RQTGHSLEAI RGRNFAEVVR GPGTDPGVCA AVAEAIRTCS SCEGETINYT AAGQPYWIRF NAHPLSDADG RYVGHASVET VITDRKVLER ELATRNAFLT AVLQTSVSAI VALNAEGGIV YANDEARRLL VLQPHRGGLR MEAVLETLDG RPLPEADMPS ALVRATGAPL HDLRYAIRRP DGQFGILSIN AAPLPQAADD ARIVISVTDI THAEASAERL RRQAAEDPLT GLANRRALAD AVETRLTEAA PFALVMLDLD NFKAVNDLQR HDTGDAVLRI AADRLRAVAG ADCLVARMGG DEFMVLAPGT DAASAPRLAE ALRAAISAPI EVGRQPVHLA ASAGIALHPD HGTSMALLMT GADIALHAAK RAGRNRSVLL SQAQFAAEAR RSAITQALAA DVEADLRLVF QPQFRACGAF DGAEALLRWT DPRLGEIGPA EFIPIAEEAG LIQRIDAHVA VLAARQLGLW ARRGWRHRLA VNASAQTFAR AGFAEELLQH LAEEDVCPQQ LVVELTETSL ATLSSVADHN IATLRRAGVG IAIDDFGTGY ASLSYLHRIE ATEIKIDRGF VAGLETAERR DSKPLIQAIL SLAHALGLAV TAEGVETERQ RSWLSAEGCD RLQGYLLGRP LPVEAFEAAF VTPAAVPG
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