| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_3046 |
|---|
| Symbol | |
|---|
| ID | 4899160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009050 |
|---|
| Strand | + |
|---|
| Start bp | 54802 |
|---|
| End bp | 56490 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640113648 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001044918 |
|---|
| Protein GI | 126463805 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.641394 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.406701 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCCTA CCCATTGCTT GAGCAGCCTG AATGTCGATG CCGCTGTTTT CGTCGCAGCA
TCGACCTTTC TGGGATTCAG CCTGCTCACG GCCTGGCTTC TCCGGCAGGA ATATTTCTTC
GGACGAGAAT ATTTCCTGAG CGCCGTCTGC GGCGTGCTCT GGTGGCTCGC CTTTGCGGGG
CTGGAAATGG CGACCCCCGG CCTCAGCTGC AAGATGGCCT TCGGCTCGCT GGCCTGGCCC
GCCATCGCGC TGGTGCCGGT CAGCTGGTTC CTGTTCCTGC GCCACTATTG CCAGGGCGGC
CGCATCGGCG GGCGGCGTCT CGAGGCAGGG CTCCTCGGGG CCATCGTCCT CTCGGTCACG
GCGATCGTCG CGACCAATCC CTGGCACGGG CTCTTCTACC TGCCGGGCAC CCACCTCGCG
GTGATCGACG GGCGGCTTTC GGGGGTCTTT CTCCACGGGC CGCTGTTCTA TGGCGCGACG
GCGCTTCTCT ATGTCTTCCT GCTCTCCTCG GTGGGCATCG CCGCCTTCGG CGCCTTCCGG
GCCGCGCGGG CACAGCGCCC GATGCTGCTG ATGATGCTCT TCGGGACGCT TGCCCCCATC
GTGGCGAACC TCGCCTATGT CCTGTTCAAG GCCACCGTCT TCGGCTTCGA CCCCACACCC
TTCGCCTTCG CCTTCGTCCT GCTCGTCCTC ACCTGGGCCA TCTACGGCAA CCGGACCTTC
GACCTGACGA CGGTCGCGCG CGATCTCATC TATTTCAACG TGGCCGACCC GGTGCTGGTG
GTAACCGCCC GCGGCCAGAT CGCGGGCCTC AATCCCGCCG CCGGCCTCCT GATGCCGGAC
CTCGCGCCCG GGACCGCGCT CAACCCTGCG GGGCCCTTTG CCTCGCTGCT TGAGCTGATG
GAGAAGGGCG AGCGCCCGAG CCCGGCGCGC GAGCCTGTCG AGATCGGCGG CCGGACGCTC
GACCTCCGGT TCCTGCCGAT CTGGCGACCG CTCGGCACCG GCCGCACGCT CCTCGGCGCC
GTGGCCCTGA TGACGGACAC GACCGAGCTT CGCCGGAATG CCGCGCGGCT CGAGGCGGCC
CTCGCCCAGT CCCGCGACCG GCTGGCCGAG ATCACCCGGC TGCGTGAGGC GGCCGAGGCT
TCGGCCCGCT CGGATCCGCT GACCGGGCTC GGCAACAGGC GCGCCCTCGA CCGTCAGTTC
GAGGCCGCCA CCGAGCGCGA GGGGGCCATC GCCCTCGCCC TGATCGACAT CGACCATTTC
AAGCAGATCA ACGACCGGCT GGGCCATGCG ATGGGCGACC GGGTGCTGCA ACGGTTCGCG
GTCGAGCTGT CGGCCGTCCT GCCCGAGGGC GCGCGCGCCT TCCGCATCGG CGGCGAGGAA
TTCCTGACCC TCTGCCCGGG ACAGGATACG GGGGCGGTGG TGGACCTTCT CGAAAAGCTC
GCACGCCGGC TGGAGGCGGA CCCGCCGCTG CGCGACGGAG ACCTGCCGCG CCTGACCTTC
TCGGCCGGCG TGGCCATGCG GCCCGGCGAC GGCAGGAGCC TCGGCCAGCT GACCGCCCGG
GCCGACGCGC GGCTCTACGA GGCGAAGCGT CGGGGCCGCA ATCAGATCCT GCATCTGGAC
GCAGCGCGGC GCGACGCGGC CGATGCGGCG GCGGTCCTGT CCGGGCCGCC GCGGCCGGCC
TCGGCCTGA
|
|---|
| Protein sequence | MDPTHCLSSL NVDAAVFVAA STFLGFSLLT AWLLRQEYFF GREYFLSAVC GVLWWLAFAG
LEMATPGLSC KMAFGSLAWP AIALVPVSWF LFLRHYCQGG RIGGRRLEAG LLGAIVLSVT
AIVATNPWHG LFYLPGTHLA VIDGRLSGVF LHGPLFYGAT ALLYVFLLSS VGIAAFGAFR
AARAQRPMLL MMLFGTLAPI VANLAYVLFK ATVFGFDPTP FAFAFVLLVL TWAIYGNRTF
DLTTVARDLI YFNVADPVLV VTARGQIAGL NPAAGLLMPD LAPGTALNPA GPFASLLELM
EKGERPSPAR EPVEIGGRTL DLRFLPIWRP LGTGRTLLGA VALMTDTTEL RRNAARLEAA
LAQSRDRLAE ITRLREAAEA SARSDPLTGL GNRRALDRQF EAATEREGAI ALALIDIDHF
KQINDRLGHA MGDRVLQRFA VELSAVLPEG ARAFRIGGEE FLTLCPGQDT GAVVDLLEKL
ARRLEADPPL RDGDLPRLTF SAGVAMRPGD GRSLGQLTAR ADARLYEAKR RGRNQILHLD
AARRDAADAA AVLSGPPRPA SA
|
|---|
| |