| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_3013 |
|---|
| Symbol | |
|---|
| ID | 4898891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009050 |
|---|
| Strand | - |
|---|
| Start bp | 21233 |
|---|
| End bp | 22552 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640113615 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001044885 |
|---|
| Protein GI | 126463772 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.655634 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTGGG CACGGCGCAT TCTCTATCGG CAATCGCTCC GCGGCTGGAT GGCGCTGGCG
CTGGTCCTCG CCGTCCTGCC GCTTCTGACC AGCGCCGTGG TGGGCTATGC CGTCTATCAC
CGCACCATCG TCAGCCCGTT CCGCGACGTG CTGACGGTTC AGCATGCGAC ACTCGTCAGC
CTCGAACGCA TCCACGACGA TTACTGGCAG GTGGCCGAAG CGGTGAACGG CTATCTGCTC
AGCGGCGAGG CCGAGCGCGC CGTCCGCTAT GCCGCCGTGG CAGCCGAGGT CGAGGCGCAG
TTCGAAAGGC TCTCGGAGGC CGTGGCGGAC GATCCGGCGC TGGTCGCGCT CATCGGGGTG
GCGCGGGCGG AATGGGCCGC GCTCGCGCGC GATGCGGAGG CCGTGCTCGC CCGTCCGCGG
GAGGGGCTGG CCGGGGCGGT GCCCGACATC GACCGGGTCG CGGCGCTCGA ACGCGAGCTG
CCGGTGGCGG CGCAGAGGCT CGAGCAGATC GTCGAGCGGC TGCGGAGCGA GAGCGAGGTG
CATCACGCGG CGGCGCTGGT GGCGCTCCGG CGGCTGGAGA TCGGGGCGGC TGCGGCCCTC
ATCCTGTCCG TCCTGATGAT GGGGCTCGGC GCCTGGGTGG TGAACCGGGC GATCGTCCTC
GGGACCGACC GGCTGGTCGA GGGCGCGCGG CGCGTGGCCT CGGGGCAGCG CGAGGAGCCG
GTGGCGGTGA CGGTGCCCCC GGAGCTCGCT GCCGTGGCCG ACGCCTTCAA CGACATGACC
CGCACCATCG TCGAGCAGGA GGCGCGGCTG CGCGAGTTCG GGCGGAGGGA CGCGCTGACC
TCGCTTCTCA ATCGCCGCGA GTTCGACCAC GCGCTGGAGC AGCGCGCGGC GCCCTGGACG
GGCGAGCCCT ATGCGCTGCT GCTGATCGAC ATCGACCGGT TCAAGCGGAT CAACGACACC
CACGGCCATG CGGTGGGCGA TGCCGTGCTG CGGGCGGTGG CCCTGCGGCT GGCCGCGTCC
GCGCGCCAGG GTTTGCCCCT CTTCCGCTAC GGCGGCGAGG AATTCGCCCT GCTCCTCGAC
CGGGCCGGGG CGGCCGAGGC CCTGTCCGAG GCCGAGCGTC TGCGCCGCGC GGTGGCGGAG
GAGCCGGTCG GGCTGGAGGA CGGCACGCGG ATCGCCGTCA CGATCAGCGT GGGCATCGCG
CTCGGCGCCC GCGGTCAGGC CGGCGCGGAG CTGTTCGCGG CCGCCGACCG CGCACTCTAT
GCGGCGAAGG ACGCGGGGCG CAATTGCAGC CGGATGGATC CCTCTGTTGT GCAGGCCTGA
|
|---|
| Protein sequence | MDWARRILYR QSLRGWMALA LVLAVLPLLT SAVVGYAVYH RTIVSPFRDV LTVQHATLVS
LERIHDDYWQ VAEAVNGYLL SGEAERAVRY AAVAAEVEAQ FERLSEAVAD DPALVALIGV
ARAEWAALAR DAEAVLARPR EGLAGAVPDI DRVAALEREL PVAAQRLEQI VERLRSESEV
HHAAALVALR RLEIGAAAAL ILSVLMMGLG AWVVNRAIVL GTDRLVEGAR RVASGQREEP
VAVTVPPELA AVADAFNDMT RTIVEQEARL REFGRRDALT SLLNRREFDH ALEQRAAPWT
GEPYALLLID IDRFKRINDT HGHAVGDAVL RAVALRLAAS ARQGLPLFRY GGEEFALLLD
RAGAAEALSE AERLRRAVAE EPVGLEDGTR IAVTISVGIA LGARGQAGAE LFAAADRALY
AAKDAGRNCS RMDPSVVQA
|
|---|
| |