Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17029_2789 |
Symbol | |
ID | 4895892 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17029 |
Kingdom | Bacteria |
Replicon accession | NC_009049 |
Strand | - |
Start bp | 2939255 |
End bp | 2940397 |
Gene Length | 1143 bp |
Protein Length | 380 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640113391 |
Product | succinyl-diaminopimelate desuccinylase |
Protein accession | YP_001044663 |
Protein GI | 126463549 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.345284 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCATCG ATCCCGTCGC GCTGACCGCC GATCTCGTCC GCTGCCCCTC GGTCACGCCC GAGGAGGGCG GCGCGCTCGA CCTGATCGAG CGGATCCTGA GCGGGGCGGG CTTCGACTGC ACCCGCGTGG ACCGCAACGG GGTGCCGAAC CTCTTCGCCC GCTGGGGCCG GAAGGGCGCG AACCGGACTT TCGGCTTCAA CGGCCATACC GATGTGGTGC CGGTGGGCGA TGCCGCCGCC TGGACCCGCG ATCCGTTCGG CGGCGAGATC GCCGATGGCT GGCTCTGGGG ACGCGGGGCC ACCGACATGA AGTCGGGCGT CGCGGCCTTC GTGGCAGCGG CGGTCGATTT CGTGCAGGAG ACCCCGCCCG ACGGGGCGGT GGTCCTGACC ATCACCGGTG ACGAGGAGGG CGACGCGACC GACGGCACGG TCGCGCTTCT CGACTGGATG GCGGCGGAGG GCGAGGCCAT GTCGGTCTGC CTCGTCGGAG AGCCGACCTG CCCCGAGCGG CTGGGCGAGA TGATGAAGAT CGGCCGCCGC GGTTCGATGA CGGCCTTTTT CACCGCCCGC GGCGTGCAGG GCCATTCGGC CTATCCGCAT CGGGCGAAGA ACCCGGTCGC CGCGCTGGCG CGGCTGATCG ATCGGCTGTC CTCGCACGAT CTCGACCAGG GCACCGAGCA TTTCGACGCC TCGACGCTGG CCGTGACCAC CTTCGACACC GGCAACCCGG CCACCAACGT GATCCCGGCC CTCTGCCGCG CGACGGTGAA CATCCGTTTC AACGATGCCC ACAGCGGCGC GAGCCTGGCC AGCTGGCTGG AGGAGGAAGC CGCCCGCGTC ACGGCCGAGA CCGGTGTCGA GATCGCGCTC AGCGCCAAGA TCTCGGGCGA GAGCTTCCTC ACGCCGCCGG GCGAGCTTTC CGAACTGGTG GCCCGCGCGG TCGAGGCCGA GACCGGCCTG CGGCCCGAGC CCTCGACCTC GGGCGGCACC TCGGACGCGC GCTTCGTGCG CGCCCACTGC CCGGTGGTGG AATTCGGCCT TGTCGGCAAG ACCATGCATC AGGTGGACGA GCGTGTCGAA GTCGCGCAGA TCGAACCGCT GAAGGCCATC TACCTCCGCA TTCTGAAAGA CTATTTCGCA TGA
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Protein sequence | MPIDPVALTA DLVRCPSVTP EEGGALDLIE RILSGAGFDC TRVDRNGVPN LFARWGRKGA NRTFGFNGHT DVVPVGDAAA WTRDPFGGEI ADGWLWGRGA TDMKSGVAAF VAAAVDFVQE TPPDGAVVLT ITGDEEGDAT DGTVALLDWM AAEGEAMSVC LVGEPTCPER LGEMMKIGRR GSMTAFFTAR GVQGHSAYPH RAKNPVAALA RLIDRLSSHD LDQGTEHFDA STLAVTTFDT GNPATNVIPA LCRATVNIRF NDAHSGASLA SWLEEEAARV TAETGVEIAL SAKISGESFL TPPGELSELV ARAVEAETGL RPEPSTSGGT SDARFVRAHC PVVEFGLVGK TMHQVDERVE VAQIEPLKAI YLRILKDYFA
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