Gene Rsph17029_2789 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRsph17029_2789 
Symbol 
ID4895892 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodobacter sphaeroides ATCC 17029 
KingdomBacteria 
Replicon accessionNC_009049 
Strand
Start bp2939255 
End bp2940397 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content70% 
IMG OID640113391 
Productsuccinyl-diaminopimelate desuccinylase 
Protein accessionYP_001044663 
Protein GI126463549 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID[TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.345284 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCATCG ATCCCGTCGC GCTGACCGCC GATCTCGTCC GCTGCCCCTC GGTCACGCCC 
GAGGAGGGCG GCGCGCTCGA CCTGATCGAG CGGATCCTGA GCGGGGCGGG CTTCGACTGC
ACCCGCGTGG ACCGCAACGG GGTGCCGAAC CTCTTCGCCC GCTGGGGCCG GAAGGGCGCG
AACCGGACTT TCGGCTTCAA CGGCCATACC GATGTGGTGC CGGTGGGCGA TGCCGCCGCC
TGGACCCGCG ATCCGTTCGG CGGCGAGATC GCCGATGGCT GGCTCTGGGG ACGCGGGGCC
ACCGACATGA AGTCGGGCGT CGCGGCCTTC GTGGCAGCGG CGGTCGATTT CGTGCAGGAG
ACCCCGCCCG ACGGGGCGGT GGTCCTGACC ATCACCGGTG ACGAGGAGGG CGACGCGACC
GACGGCACGG TCGCGCTTCT CGACTGGATG GCGGCGGAGG GCGAGGCCAT GTCGGTCTGC
CTCGTCGGAG AGCCGACCTG CCCCGAGCGG CTGGGCGAGA TGATGAAGAT CGGCCGCCGC
GGTTCGATGA CGGCCTTTTT CACCGCCCGC GGCGTGCAGG GCCATTCGGC CTATCCGCAT
CGGGCGAAGA ACCCGGTCGC CGCGCTGGCG CGGCTGATCG ATCGGCTGTC CTCGCACGAT
CTCGACCAGG GCACCGAGCA TTTCGACGCC TCGACGCTGG CCGTGACCAC CTTCGACACC
GGCAACCCGG CCACCAACGT GATCCCGGCC CTCTGCCGCG CGACGGTGAA CATCCGTTTC
AACGATGCCC ACAGCGGCGC GAGCCTGGCC AGCTGGCTGG AGGAGGAAGC CGCCCGCGTC
ACGGCCGAGA CCGGTGTCGA GATCGCGCTC AGCGCCAAGA TCTCGGGCGA GAGCTTCCTC
ACGCCGCCGG GCGAGCTTTC CGAACTGGTG GCCCGCGCGG TCGAGGCCGA GACCGGCCTG
CGGCCCGAGC CCTCGACCTC GGGCGGCACC TCGGACGCGC GCTTCGTGCG CGCCCACTGC
CCGGTGGTGG AATTCGGCCT TGTCGGCAAG ACCATGCATC AGGTGGACGA GCGTGTCGAA
GTCGCGCAGA TCGAACCGCT GAAGGCCATC TACCTCCGCA TTCTGAAAGA CTATTTCGCA
TGA
 
Protein sequence
MPIDPVALTA DLVRCPSVTP EEGGALDLIE RILSGAGFDC TRVDRNGVPN LFARWGRKGA 
NRTFGFNGHT DVVPVGDAAA WTRDPFGGEI ADGWLWGRGA TDMKSGVAAF VAAAVDFVQE
TPPDGAVVLT ITGDEEGDAT DGTVALLDWM AAEGEAMSVC LVGEPTCPER LGEMMKIGRR
GSMTAFFTAR GVQGHSAYPH RAKNPVAALA RLIDRLSSHD LDQGTEHFDA STLAVTTFDT
GNPATNVIPA LCRATVNIRF NDAHSGASLA SWLEEEAARV TAETGVEIAL SAKISGESFL
TPPGELSELV ARAVEAETGL RPEPSTSGGT SDARFVRAHC PVVEFGLVGK TMHQVDERVE
VAQIEPLKAI YLRILKDYFA