| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_2787 |
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| Symbol | |
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| ID | 4895885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17029 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009049 |
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| Strand | - |
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| Start bp | 2936538 |
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| End bp | 2938796 |
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| Gene Length | 2259 bp |
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| Protein Length | 752 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640113389 |
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| Product | ribonuclease R |
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| Protein accession | YP_001044661 |
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| Protein GI | 126463547 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCAGC TCCCTTCGAA AGCCCAGATC CTCGACTGGA TCGCCCAGAA TCCCTCCCTT
TCCGCGAAGC GCGACATCGT GCGCGCCTTC GGCATCAAGG GGAGTGCCGC GCGCATCGAA
CTGAAGCGCC TCCTGCGCGA GATGGAGGCC GAAGGCGCGC TGGAGAAACG AAAGCGGACC
TTCACGCCGC AGGGTGCCTT GCCGCCGGTG TCGGTGCTCG AGATCGTGGG GCCCGATGCG
CAGGGCGACC TCTTCGCGCG TCCGCTGGAA TGGGCGGGCG AGGGCGAGCC GCCCCGCATC
CTCTTCGTGG CCAAGAAGGG CGATCCGGCG CTGGCGCAGG GCGAGCGCAT CCTCGCACGG
CTGACCGAGG TCGAGGGCGA GGATGAGGGT CACACCCACG AGGCGCGCCT GATCCGGCGG
CTCGGCGGAT CGAAGCCGAA GATCCTCGGC ATCTTCCGCG CCAGCGACGA CGGCGGGCGG
ATCCTGCCCA TCGACAAGGG CGAGGACAAG GAATGGCGCG TGGCCCGCGA CGGGGCGGCC
GGGGCGCGCG ACGGCGAACT GGTCGAGGCC GAGCAGGCCG GGCCGCGCCG CCTCGGGCTG
CCGCTCGCGC GGATCACCGC GCGGCTGGGC GATCCGGCAG GCCCGCGCGC CGTGTCGCTG
ATCGCGATCC ACCAGCATGG CATTCCCGAC AGCTTCCCCG ATGCGGTGCT GGCGGAAGCC
GAGGCGGCGG GCCCCGCGCC CATGGCCGAA CGCGAGGATC TGCGGCATCT GCCCTTCGTC
ACCATCGATC CGGTCGATGC GCGCGACCGC GACGACGCGG TTCTGGCCGA GCCCGATCCC
GATCCGCAGA ACCCGGGCGG CCACATCCTC TGGGTGGCCA TCGCCGATGT GGCCCATTAT
GTGCGCCCCG GCTCGGCGCT CGACCGCGAG GCGCGGCGAC GGGGCAACTC CACCTATTTC
CCGGACCGCG TGGTGCCGAT GCTGCCCGAT GCTTTGTCGG GCGATCTCTG CTCGCTGCAT
CAGGAGGTGG ACCGGCCCTG CATGGCGGTG CGGATGCGGC TCTCGGCACA GGGCGAAAAA
CTTTCCCACC GCTTCACGCG CGGGATGATG CGCTCGCGCG CGAGCCTGAA CTACGCCCAG
GTGCAGAAGG CGCAGGACGG CCAGCCCGAC GAGGCGACGG CGCCGCTGCT CGAGACGATC
ATCCGCCCGC TCTACGAGGC CTACGCGGCG CTCAAGCACG CCCGCGCCCT GCGCCAGCCG
CTCGAACTCG ACCTGCCCGA GCGCAGGATC GAGCTCTCGG ACGAGGGGCG GGTCCTGTCG
GTGGCCTTCC GCGACCGGTT CGATGCTCAC CGGCTGATCG AGGAATTCAT GGTGCTGGCC
AATGTGGCCG CCGCCGAAGA GCTCGTGCGC CTGCGCCGGC CGCTGCTCTT CCGTGTCCAT
GAGGAGCCGT CGGCGGACAA GCTCGAGGCG CTGCGCGAGG TGGCCGAGGC CTCGGGCTTC
ACGCTGGCCA AGGGGCAGGT GCTGAAGACC GCGCATCTGA ACCGGCTGCT GGCGCAGGCC
CAGGGCACCG AGTTCGACGA GCTGATGAAC ATCACCACGC TGCGCTCGAT GACCCAGGCC
TACTACCATC CCGAGAACTT CGGCCATTTC GGGCTGGCGC TGCGCAGCTA TGCCCATTTC
ACCTCGCCGA TCCGGCGCTA CTCCGACCTG ATCGTGCATC GGGCGCTGAT CCTTGGGCAT
GGCTGGGGCG ACGACGGGCT GTCGGCGCAG GATATCGAGA TGCTCGAGGA GACGGCCAAG
CAGATTTCCG ATACCGAGCG GCGCAGCATG GCGGCCGAGC GCGATACGAC CGACCGTTAT
CTCGCCTCCT GGCTGTCGGA CCGGGTGGGG GCGGAATTCA CCGGCCGGAT CTCGGGTGTG
CAGCGGTTCG GATTGTTCGT GAAGCTCGAC GAGAGCGGGG CCGACGGGCT GATCCCGATC
CGCTCGGTGG GCCGGGAATT CTTCCACTTC GATCCCGAAA GCCAGACGCT GATGGGGTCG
GACACCGGCC TTGTGCTGGG CATCGGCCAG CGGGTGACGG TGCGGCTGGC CGAGGCGGTG
CCGCTGACCG GCGGCCTCAT GCTGGAGCTG CTGACGGTCG AGGACCGCGG GCTGCCCGCG
CCGAAGCGCC GCCGGGGCCG GTCCGCGCCG CGCAAGCCGG GCCGGGAGGC AGCCAAGGCC
GGCAAGGTCA AGCGGCGGGT GTTGCGCACG CGCCGCTGA
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| Protein sequence | MDQLPSKAQI LDWIAQNPSL SAKRDIVRAF GIKGSAARIE LKRLLREMEA EGALEKRKRT
FTPQGALPPV SVLEIVGPDA QGDLFARPLE WAGEGEPPRI LFVAKKGDPA LAQGERILAR
LTEVEGEDEG HTHEARLIRR LGGSKPKILG IFRASDDGGR ILPIDKGEDK EWRVARDGAA
GARDGELVEA EQAGPRRLGL PLARITARLG DPAGPRAVSL IAIHQHGIPD SFPDAVLAEA
EAAGPAPMAE REDLRHLPFV TIDPVDARDR DDAVLAEPDP DPQNPGGHIL WVAIADVAHY
VRPGSALDRE ARRRGNSTYF PDRVVPMLPD ALSGDLCSLH QEVDRPCMAV RMRLSAQGEK
LSHRFTRGMM RSRASLNYAQ VQKAQDGQPD EATAPLLETI IRPLYEAYAA LKHARALRQP
LELDLPERRI ELSDEGRVLS VAFRDRFDAH RLIEEFMVLA NVAAAEELVR LRRPLLFRVH
EEPSADKLEA LREVAEASGF TLAKGQVLKT AHLNRLLAQA QGTEFDELMN ITTLRSMTQA
YYHPENFGHF GLALRSYAHF TSPIRRYSDL IVHRALILGH GWGDDGLSAQ DIEMLEETAK
QISDTERRSM AAERDTTDRY LASWLSDRVG AEFTGRISGV QRFGLFVKLD ESGADGLIPI
RSVGREFFHF DPESQTLMGS DTGLVLGIGQ RVTVRLAEAV PLTGGLMLEL LTVEDRGLPA
PKRRRGRSAP RKPGREAAKA GKVKRRVLRT RR
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