| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_2465 |
|---|
| Symbol | |
|---|
| ID | 4897342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009049 |
|---|
| Strand | - |
|---|
| Start bp | 2597676 |
|---|
| End bp | 2599265 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640113063 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001044339 |
|---|
| Protein GI | 126463225 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.352303 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCATCC GAGCGCGCTT GCTGGCGACG GCGGCCGTTG CCGCATTCGC CCTGACCACG
GCTCCGCTTT CCGCCGAGAC GCCGCCCGAC ACCTTCATCC AGGCCTGGGC CATCGACGAC
ATGATCACGC TCGACCCGGC CGAGGTGTTC GAGTTCACCG CAGCGGAGAT CATCGGCAAC
AGCTACGAGA CGATCATCGG CTACGACGTC AACGACGTGT CGAACATCTT CGGGCGCGTG
GCCGAGAGCT GGGAGCTGTC GGAGGACGGC CTGACCATGA GCTTCAAGGT GCGCGAGGGC
AAGACATTCG CCTCGGGCAA CGACCTGACC GCCGAGGATG TGGTCTACAG CCTCGTGCGG
GCCGTGAAGC TGGACAAGTC GCCGGCCTTC ATCCTCGGCC AGTTCGGCCT GACGCCCGAC
AATGTCGAAG AGAAGATCAA GCAGACCGGC GACTATGCCT TCACCTTCGA GATGGACAAG
GCCTATGCGC CGACCTTCCT GCTCTACTGC CTGACGGCGA CGGTCGCCTC GGTGGTGGAC
AAGGATCTCG TGCAGTCCAA CGAAGCGGAC GGCGACTGGG GCTACAACTG GCTCAAGACG
AATTACGCAG GCTCCGGCCC CTTCACCATC CGCGAATGGC GCGCGAACGA GGCCGTCGTG
ATGGAGCGGA ACGACAACTG GGACGGCGAG AAGCCCGCCA TGGCGCGCGC GATCTACCGC
CACATTCCCG AGGCCGCGAC CGAGCGGCTG CTGCTCGAGC AGGGCGACAT CGACATCGCG
CGCAAGCTTT TGCCCGAAGA GATCGAGGCG CTGAGCCAGA ACCCCGACAT CAAGATCCAG
AGCGGGGTGA AGGGCACGAT CTTCTATCTC GGCCTGAACC AGAAGAACGA GAATCTGGCC
AAGCCCGAGG TGCGCGAGGC GATGAAATGG CTCGTAGACT ACGACGCCAT CGCCGAGACG
CTGGTCAAGG GCATGAAGAA GAAGCACCAG ACCTTCCTGC CCGAGGGCTT CCTCGGCGCG
CTGGACGAGA ACCCCTACAG CTTCGATCCG GCCAAGGCCA AGGAGCTTCT GGCGCAGGCG
GGCCTGCCCG ACGGCTTCAC CGTCACGATG GACACCCGCA ACACGCCCGA GGTGACCTCG
ATCGCGCAGG CGATCCAGCA GACGATGGCG CAGGCCGGGA TCACCATCGA GATCATCCCC
GGCGACGGCG GCCAGACGCT CGAGAAGTAC CGGGCGCGGA CGCATGACAT CTATATCGGC
CAGTGGGGCC CCGACTATCA AGACCCGCAT ACCAACGCGA CCTTCGCGCA GAACCCCGAC
AATTCCGACG ATGCGGCCTC GAAGCCGCTG GCCTGGCGCA ACGCCTGGGA GATCCCCGAG
CTGACCGCCC AGGCGGACGC CGCCGTGCTC GAGCGCGACA CCGAGAAGCG CGCCCAGATG
TATCGCGACA TGCAGGAGGA GGTGCTGAAG ACCTCGCCCT TCGTCATCAT GTTCCAGGAA
TCCGAGGTCG TCGCCATGCG CAAGAACGTC GAGGGCTACA TCATCGGCCC GTCGTTCAAC
GACAACTCGT TCCGGGCCGT GACGAAGTAG
|
|---|
| Protein sequence | MFIRARLLAT AAVAAFALTT APLSAETPPD TFIQAWAIDD MITLDPAEVF EFTAAEIIGN
SYETIIGYDV NDVSNIFGRV AESWELSEDG LTMSFKVREG KTFASGNDLT AEDVVYSLVR
AVKLDKSPAF ILGQFGLTPD NVEEKIKQTG DYAFTFEMDK AYAPTFLLYC LTATVASVVD
KDLVQSNEAD GDWGYNWLKT NYAGSGPFTI REWRANEAVV MERNDNWDGE KPAMARAIYR
HIPEAATERL LLEQGDIDIA RKLLPEEIEA LSQNPDIKIQ SGVKGTIFYL GLNQKNENLA
KPEVREAMKW LVDYDAIAET LVKGMKKKHQ TFLPEGFLGA LDENPYSFDP AKAKELLAQA
GLPDGFTVTM DTRNTPEVTS IAQAIQQTMA QAGITIEIIP GDGGQTLEKY RARTHDIYIG
QWGPDYQDPH TNATFAQNPD NSDDAASKPL AWRNAWEIPE LTAQADAAVL ERDTEKRAQM
YRDMQEEVLK TSPFVIMFQE SEVVAMRKNV EGYIIGPSFN DNSFRAVTK
|
|---|
| |