| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_2423 |
|---|
| Symbol | |
|---|
| ID | 4897824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009049 |
|---|
| Strand | - |
|---|
| Start bp | 2552878 |
|---|
| End bp | 2554233 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640113021 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001044297 |
|---|
| Protein GI | 126463183 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0441886 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.25868 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCCGTA GTTCCACCTT CACCAGCCAT GCGCGGGCGA TTCTCGCGCT GGGGCTTCCC
CTCGTCGGCA GTCATCTGGC GCAGATGTCG CTGCATGTCA CCGATACGGT GATGCTGGGC
TGGTATGGCG TGACCGAACT GGCCGCCGTG GTGCTCGGCG CCTCGCTCTT CTTCGTGACC
TTCATCCTGG GCTCTGGCTT CGCGCAGGCC GTCATGCCGA TGGTGGCCGA GGCGCTCGGG
CGGGGCGACG AGACGCAGGT GCGGCGCGAC ACGCGGATGG GGCTCTGGCT CTCGATCGCT
TTCGGGCTGC TCGTCTATCC GCTGTTCTGG TTCTCGGGCT CGATCCTTCT GGCGCTGGGC
CAGCAGCCCG AGGTGGCGGC CCTTGCGCAG GATTACCTGC GGATCGCGGG GCTGGGCATG
GTGCCCGCGC TGCTCATCAT GGTGCTGAAG AGCTATCTCT CGGCGCTGGA GCGGACGCAG
ATCGTGCTCT GGGCCACGCT TGCCGCGGTG GTGGTCAATG CGGGCCTCAA CTGGGTGCTG
ATCTTCGGCC GGTTCGGCGC GCCGGAGCTG GGCGTGGAGG GCGCGGCCAT CGCCTCCGTC
GGGGCGCAGA TCATGTCGCT CGCCGCGCTC GGCCTCTATG CCGCCCTTCT GCCGCCGCTG
CGCCGGTTCA ACCTGTTCCA GCGCTTCTGG CGCCCCGACT GGCATGCGCT GGCGCGGGTC
TTCGCGCTGG GCTGGCCCAT CGGATTCACC GGCCTTGCCG AGGGCGCGAT CTTTCAGGCG
GCGGCGCTGA TGATGGGCTG GATCGGCACC GTGCCGCTCG CCGCCCACGG GATCGCGCTC
GAGGTGACGG CGCTGGCCTT CATGGTCCAT GTGGGGATCT CGAACGCGGC GACGATCCGC
ACGGGCCGCG CGGACGGGGC GGGCAACACG GAGGGCCTGC GGGACGGGGC CAAGGTCGCG
ATCCTGCTCT CGCTGGGCTT CGGCCTCGTG ATGGTGGCGA TCTTCCTCTT GTTCCCGGGC
CCGATCATCG CGCTCTTCCT CGACCGGGCG AACCCCGAGT TCGACGAGAT CGTGGCTTTC
GGTTCGGTGC TGCTGGCCTT CGCGGCCCTG TTCCAGATCG CCGACGCCAT GCAGGTGATC
GCGCTCGGCC TGCTGCGCGG GCTGCGCGAC ACGCAGGTAC CGATGTGGCT GGCGAGCTTC
AGCTACTGGA TGGTGGGGAT CCCTGCGAGC TATGTCCTCG GCTTTCCGAT GGGGCTCGGC
GGCCCCGGCC TCTGGCTGGG CCTCGTCGTA GGGCTGACGC TGGCCGCGAT CCTGCTCATG
ACCCGCTTCT GGCTCCGCGC CCCCCGGCTG GCCTGA
|
|---|
| Protein sequence | MVRSSTFTSH ARAILALGLP LVGSHLAQMS LHVTDTVMLG WYGVTELAAV VLGASLFFVT
FILGSGFAQA VMPMVAEALG RGDETQVRRD TRMGLWLSIA FGLLVYPLFW FSGSILLALG
QQPEVAALAQ DYLRIAGLGM VPALLIMVLK SYLSALERTQ IVLWATLAAV VVNAGLNWVL
IFGRFGAPEL GVEGAAIASV GAQIMSLAAL GLYAALLPPL RRFNLFQRFW RPDWHALARV
FALGWPIGFT GLAEGAIFQA AALMMGWIGT VPLAAHGIAL EVTALAFMVH VGISNAATIR
TGRADGAGNT EGLRDGAKVA ILLSLGFGLV MVAIFLLFPG PIIALFLDRA NPEFDEIVAF
GSVLLAFAAL FQIADAMQVI ALGLLRGLRD TQVPMWLASF SYWMVGIPAS YVLGFPMGLG
GPGLWLGLVV GLTLAAILLM TRFWLRAPRL A
|
|---|
| |