| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_1870 |
|---|
| Symbol | |
|---|
| ID | 4897724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009049 |
|---|
| Strand | + |
|---|
| Start bp | 1978201 |
|---|
| End bp | 1979799 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640112464 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_001043746 |
|---|
| Protein GI | 126462632 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCGGTC CTGAGGCGCG CGCCACGGGC CTGCGCACCT GGGCGGCCTT CACCGCCATG
TGCCTCGGCA TGTTCATGGC GATCCTCGAC GTCCAGATCG TCGCCACCTC GCTGCCCGAG
ATGCAGCGCG CGCTCGGGAT CTCTCCCGAC CGGATGAGCT GGGTGCAGAC CGCCTATCTC
ATCGCCGAAG TGATCGCGAT CCCGCTCACG GGGGCGCTCA TGCGCATCCT GACCATGCGC
GGGCTGTTCG CGCTGACGAC CTCGCTCTTC ACCCTCGCCT CCATCGGCTG CGCGGCCAGC
GAGAGCTTCG GCCCGCTGGT GGCCTGGCGG GTGCTGCAGG GCTTTGCCGG CGGCACGCTG
ATCCCCGCAG TCTTCGCGGC CGTGTTCCTG CTGTTTCCGG TCCACCGGCA GGGTCTCGCC
ACCACGCTTG CGGGCGTGCT CGCCGTGCTT GCGCCCACCG TCGGGCCGGT CGTCGGCGGC
TGGATTACCG AAAGCTGGTC GTGGCACTGG CTCTTCCTCA TCAACGTGGC GCCGGGCGTG
CTGGCGGTGG GGATCGGCGC GACCCTCCTG CCGCGCGAGC GGCTGCGGCT CGCCGAGGCG
CGGCAGCTCG ATCTCGCAGC CCTCGGGCTC CTCGCGCTGT CTCTCGCCGC GCTCGAGATC
GCGCTGAAGG AGGCGCCGGG GCGCGGCTGG ACGAGCGGCC TCGTCCTCGC TCTTCTCGCC
CTCTGGGCCG CCGCGGGCGC GGGCTTCGTG CGCCGCTGCC TGAGCGGCCC CCGCCCCGTG
GTGGAGTTGC GCGCCTTCGC CGACCGGCGC TTCGCGCTCG CCTGCGTGCT GAGCTTCGTG
CTGGGGATCG GTCTCTTCGG GTCGGTCTAT CTGATGCCGG TCTTTCTCTC CTTCGTGCGC
GGGCACGGGC CGCTCGAGAT CGGGACCATT ATGCTGGTGA CGGGCGTGGC GCAGCTCCTG
ACCGCGCCGC TCGCGGTGGC GGCCGAGCAG CGGCTGGGGG CGCGACTGCT GACGGGCTTC
GGCTTCGCGC TCTTCGCGGC GGGCCTTGCG CTCAGCTCCT TCCAGACGCC GCGCACCGAT
CATGACGAGA TGTTCTGGCC GCAGGTGGTG CGCGGGGTGG CGATCATGTT CTGCCTGCTG
CCGCCGACCC GTCTCGCGCT CGGCCATCTC TCCGAGGCGC GCGTGGCGGA TGCGAGCGGG
CTCTTCAACC TGATGCGCAA CCTCGGCGGC GCCATCGGCC TCGCGCTGAT CGACACGGTG
ATCTTCTCGC GCAGCGCGGG CCATGGCGAG AGCCTGCTCG CGCGGCTCAC CGCCCGCGAT
CTCGAGGCCG CGCGCTTCGT GGGCGTGCCC GAGGCGATGC TCGCGAGCCT GCCGCCGGGG
CCGGTGCCGC CTCAGGCGCA GGCGATGCTG GCGCCGCTTC TGGAAAAGGC TGCCCTCACT
CAGGCCATCA ACGAGGCTTG GGGGATGATC GCGCTTCTGA CGCTGGCGGC GCTTCTCTGC
GTGCCCTTCG CCCGGCCGTC GCGCGGACAG GATCGGGCAG CACCCGTCAC GCTGCAGAGA
GCGCCGCCAC GACGCTCTCC CACCCCGCGC CGCCGGTGA
|
|---|
| Protein sequence | MPGPEARATG LRTWAAFTAM CLGMFMAILD VQIVATSLPE MQRALGISPD RMSWVQTAYL
IAEVIAIPLT GALMRILTMR GLFALTTSLF TLASIGCAAS ESFGPLVAWR VLQGFAGGTL
IPAVFAAVFL LFPVHRQGLA TTLAGVLAVL APTVGPVVGG WITESWSWHW LFLINVAPGV
LAVGIGATLL PRERLRLAEA RQLDLAALGL LALSLAALEI ALKEAPGRGW TSGLVLALLA
LWAAAGAGFV RRCLSGPRPV VELRAFADRR FALACVLSFV LGIGLFGSVY LMPVFLSFVR
GHGPLEIGTI MLVTGVAQLL TAPLAVAAEQ RLGARLLTGF GFALFAAGLA LSSFQTPRTD
HDEMFWPQVV RGVAIMFCLL PPTRLALGHL SEARVADASG LFNLMRNLGG AIGLALIDTV
IFSRSAGHGE SLLARLTARD LEAARFVGVP EAMLASLPPG PVPPQAQAML APLLEKAALT
QAINEAWGMI ALLTLAALLC VPFARPSRGQ DRAAPVTLQR APPRRSPTPR RR
|
|---|
| |