| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_1688 |
|---|
| Symbol | |
|---|
| ID | 4896623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009049 |
|---|
| Strand | + |
|---|
| Start bp | 1779703 |
|---|
| End bp | 1781415 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640112281 |
|---|
| Product | flagellar M-ring protein FliF |
|---|
| Protein accession | YP_001043570 |
|---|
| Protein GI | 126462456 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
|---|
| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00646799 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000845587 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCCTT CTCCCACGCC TCCCGCCGTG CGCGGACCTG CTGGCGCACT GATCCCGCAG
ATGCGCGGCA TGCTGGATCA GATCCGCCGG TTCGGCGACC AGCCGGGCCT GCGCCGCGCC
ATGCCCGCGA TCCTCATCCT CGCGGTGACG GTGCTCGCGC TGGCCGGATG GATCCTCCTG
CGCGAGCCCG CCCGCGTGAC GCTCTATCCC GGCCTGCCCG AGGCCGAGAA GGCGCGCGTG
ATCGACAGCC TGACCGGCGG CGGCATCGCG GCCGTGATCG ACGAGCGCAC CGGCGAGGTG
GCGGTGCCGG GCGCCGACTA TCACCGCGCG CGGATGCTGC TCGCGGCGCA GGGCCTGCCG
CAGGGCCTGC CCGACGGGAA TGCGCTTCTG AGCGATCTGC CGATGGGCAC CTCGAAATCG
GTCGAGACGG CGCGGCTCCG GCAGGCGCAG GAGCTCGATC TCGCGCGGTC GATCACCGAG
ATTTCCGCCG TCTCGGCCGC GCGCGTGCAT CTGGCGCTGC CCGAACGCTC GGCCTTCCTG
CGCGAGAGCC AGCCCCCGCG GGCGAGCGTG TTCCTCCAGA TCGTGCCGGG GCGCACGCTC
GACGGCGCGC AGGTCGAGGC CATCGTGAAC CTCGTCTCCT CCTCGGTGCC GGGCATGGCG
CGGCAGGATG TGACGGTGGT CGACCAGATG GGGCGGCTCC TGTCGCGGGG CTCGGACGAT
CCGGCGGTGC TGCTGAACGA CCGCCAGCTT CAGCACCGGG TGCAGCTCGA GACGCTCTAC
CGCAACCGGA TCGAGAGCCT GCTCACCCCC ATCGCGGGGC CGGGCAACCT TGCGGTGCAG
GTCACGATCG ACATGGATTT CACCCGCCAG GAAATCCGCG AGGAGCAGGT CGACCCCGAC
CGCACCGCGC TGCTGGCCGA GCAGAGCCAG ATCGAGGAGA CGGCCGACCC GCAGGCCCGG
GGCATTCCGG GCGCCGTGTC GAACAGCCCG CCGCCCGAGG CCGCGCTCGA GGCCGGGGCG
CCGCCCACCG CCGCGGGCGA GGCGGCAACG CCGATGCGCA GCCGGTCGCA GAACTCGACC
CGCAATTTCG AGGTCAGCCG CAAGATCGAG ACCACCCTGC CCGCCACCGC CCGCGTCGCG
CGGGTGAGTG CGGCGGTCGT GGTGCGCGCC CAGCCGCAGC CCGCCGCCAC CGATCCCGCA
GCCCCGCCGC CCCCGCTCCT GCCTGAGGCG CTGAAGGCCG ATCTCGAGCG GCTGACCCGC
TCGGCCGTGG GCTTCGACGC CGACCGGGGC GATGTGGTGA CGATCACGGC CCAGCCCTTC
CTCGACACGG TGGTGCCCGA GGCCTCCGGC TGGAGCGCCG AGCCGTGGCT CGCGGATCTG
GCGCGGCAGG GCTTCCTTCT CGCGGCGCTG GCCGTGGTGG CGCTGGGCGT CGTGCGGCCG
ATCCTGAACC GCGTGCTTCT GCCCGCACCC GCCGCTGCCG GCGCACTGCC TCTGGGCGAA
ACGGCTGTGG AGGTGGGCGA AGGCGAAAGC CTCGACGACG TGCGCGCCCG CCTGAAGGCG
CGTCAGGGGG CGCTGACCAA GAACATGCTG GATGCGGCGC GCAGCCACGA GGAGCAGATC
CTCGTCATCC GCAAGCTCGT CGAGGAGGAC GAGGGCCGCA TCGCCACCAC CATCCGCCAG
ATGATCGCGG CCGAGCTCGA CACCGTGAAG TGA
|
|---|
| Protein sequence | MAPSPTPPAV RGPAGALIPQ MRGMLDQIRR FGDQPGLRRA MPAILILAVT VLALAGWILL
REPARVTLYP GLPEAEKARV IDSLTGGGIA AVIDERTGEV AVPGADYHRA RMLLAAQGLP
QGLPDGNALL SDLPMGTSKS VETARLRQAQ ELDLARSITE ISAVSAARVH LALPERSAFL
RESQPPRASV FLQIVPGRTL DGAQVEAIVN LVSSSVPGMA RQDVTVVDQM GRLLSRGSDD
PAVLLNDRQL QHRVQLETLY RNRIESLLTP IAGPGNLAVQ VTIDMDFTRQ EIREEQVDPD
RTALLAEQSQ IEETADPQAR GIPGAVSNSP PPEAALEAGA PPTAAGEAAT PMRSRSQNST
RNFEVSRKIE TTLPATARVA RVSAAVVVRA QPQPAATDPA APPPPLLPEA LKADLERLTR
SAVGFDADRG DVVTITAQPF LDTVVPEASG WSAEPWLADL ARQGFLLAAL AVVALGVVRP
ILNRVLLPAP AAAGALPLGE TAVEVGEGES LDDVRARLKA RQGALTKNML DAARSHEEQI
LVIRKLVEED EGRIATTIRQ MIAAELDTVK
|
|---|
| |