Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17029_1662 |
Symbol | |
ID | 4895821 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17029 |
Kingdom | Bacteria |
Replicon accession | NC_009049 |
Strand | - |
Start bp | 1756345 |
End bp | 1757064 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640112255 |
Product | FliA/WhiG family RNA polymerase sigma factor |
Protein accession | YP_001043544 |
Protein GI | 126462430 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.798298 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0434803 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCATG CACGCGGATA TGCCGAGCAG ACCCAGACGC CCGAGCGGCT GGTGCGCGCC CACATGGATC TCGTGCGGCG CATCGCCTGG AACCTGCACG CGCGGATCGG CCGCAAGGTC GAGATCGACG ACCTGATCCA GGTGGGCTAC ATGGGCCTCG TGGATGCAAG CCGCCGCTAC GAGCCGCGCG AGGGCGTGAG CTTCGCCGCC TATGCCGCCA TCCGCATCCG CGGCTCGATC ATGGATTTCC TGCGCTCGAA CTCGGCGCTG TGCCGCACGA CGATCCTCAT GCAGCAGAAG GTCAAGGCCG CGGTCCAGCG TCTCGAGGGG CGGCTCATGC GCGCGCCCGA GACGCCGGAA GTGGCGGCCG AGCTGTCGAT GCCGGTGGGC GAATATCAGG ACTGGCTCGC GCAGTTCGCA GGCAGCCAGA CCGCCTCGCT GGACGAGGTC TACGACGACC AGTCCGCGCT GTTCGAAGGC CACGATCCCT CGGCCGAGGA TCGTCTGCAG GCCAGCCAGA TGCGCGGGCT CCTGAGGCAG GCCCTGGGCA GGATGCCGGA ACGCGAGGCC CTGCTGCTGC AGCTAATCTT CGTCGAGGAG TTGAACGTCT ATGAGGTGGG CGAGATCCTC GGCGTCACGA CCGGCCGGGT GTCGCAGATC AAGAAGGCCG CCATCGAGCG GCTGCGGGGC CTGATCGACG CCCTGCAGGG CGAGGTCTGA
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Protein sequence | MIHARGYAEQ TQTPERLVRA HMDLVRRIAW NLHARIGRKV EIDDLIQVGY MGLVDASRRY EPREGVSFAA YAAIRIRGSI MDFLRSNSAL CRTTILMQQK VKAAVQRLEG RLMRAPETPE VAAELSMPVG EYQDWLAQFA GSQTASLDEV YDDQSALFEG HDPSAEDRLQ ASQMRGLLRQ ALGRMPEREA LLLQLIFVEE LNVYEVGEIL GVTTGRVSQI KKAAIERLRG LIDALQGEV
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