| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_1443 |
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| Symbol | |
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| ID | 4897023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17029 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009049 |
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| Strand | - |
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| Start bp | 1500420 |
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| End bp | 1503917 |
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| Gene Length | 3498 bp |
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| Protein Length | 1165 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640112031 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001043325 |
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| Protein GI | 126462211 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0802912 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAACG GAACGCGGAT CCTCCTCGGC GGTGCGCCCG AGGGCTACGA TGCCCGGCTG
GTCGCGAAAG AGCTCGACCG CGGTGCCCCT GTCATTCACG TCGCGCGCGA CGACAAGCGG
CTCGAGGCCA TGCGCACGGC GCTGGCCGTC ATGGCGCCGC GCGCCGTGGT GCTGGAGCTT
CCGGCCTGGG ACTGTCTGCC CTACGACCGG GTCTCGCCCA ACCCCGAGAT TTCGGCGCGG
CGGATGGCGA CGCTCGCCGC CCTGGCGCAC GGGATGCCGG GGGCCTTCGT CCTGCTGACC
ACGCTCAATG CCGCGACCCA GCGCATTCCT GCGCGCGAGG TGCTGCGGGC GGCCTCCTTC
TCGGCCCGCG TGGGCGACCG GGTGGATGAA GAACGGCTCC GGTCCTATCT CGCCCGCATG
GGATTCTCGC TCACCGACAC GGTGACGGAG CCCGGCGACT ATGCGATCCG CGGCGGCATC
GTCGACATCT ATCCGCCGGG TGTGGCGGGG CCGGTGCGGC TCGATTTCTT CGGCGATGTG
CTGGACGGGG CGCGCCGCTT CGACCCCGAG ACCCAGCGCA CGGTCGAGAA GCTCGACCTC
GTGGAGCTGG CCCCGGTGTC GGAGGTGATG CTGGACGAGG GTGCCATTAC CCGCTTCCGC
CAGAACTATC GGATCGAGTT CGGCGCGGCG GGGACGGACG ACCCGCTCTA CGAAGCCGTG
TCGGCGGGCC GCAAGCATCA GGGGATGGAG CACTGGCTGC CCTTCTTCCA CGCGCGGCTC
GAGACGCTCT TCGACTATCT GCCCGAGGCG AGCGTGATGC TCGACGATCA GGTGACGCCC
GCGCGGATCT CGCGCTGGGA GGGGATCGCC GACCAGTATG ACGCGCGGCG CGAGGCGATG
ACGGCGAAGG GCCGGCTCGA CACGGTCTAC AAGCCTGCCG CGCCGGATCT CCTCTATCTC
GACGAGGCCG CCTGGGAGGC GGCCGTGGCC GGGCACCGGG TGATCCAGCT CTCGCCGCTG
GCCCAGAGCC CCGGGCCGGG CGTCCTCGAT GCGGGCGGGC GGATGGGGCG CAGCTTCGCG
CCCGAGCGTC AGGCCGAAAA CATCAGCCTG TTCGGTGCCT TGGTCGATCA TGTTTGCAGA
TTGCGCGAGG ATCGGCAGGT GGTGATCGCC AGCTGGTCCG AAGGCGCGCG CGAGCGGCTG
AAGGGGCTTC TCGAGGAAGC CGGCCTGCAG GGCACGAAGC TCGCGCAGGA CATCCGCGAC
GTGCCCGAGG GACGCGGCGG CACGCATCTG ATGGTCTGGG CGCTGGAGCA GGGCTTCACC
GCGCCGGGCC TCGCCGTGAT CTCGGAACAG GACGTGCTGG GCGACCGGCT GATCTCGAAG
CCGAAGAAGC GCCGGAAGGC CGAGAACTTC CTGCGCGAGC ACGACACGCT GACGCCCGGC
GATCTCGTCG TCCATGTCGA GCATGGCGTG GGCCGCTACA TGGGCCTCGA GACGCTGCGG
GTGCCGCAGC CGCCCTCGAA CAAGCCGGGG CCGCCGCACG ATTACCTGCA TCTCGTCTAT
GCCGAGGACG CGAAGCTCTA CCTGCCGGTC GAGAATATCG AGCTTCTGAG CCGCTACGGG
CACGAAGAGG GGCTGCTCGA CAAGCTGGGC GGCGGGGCGT GGCAGGCCAA GAAGGCGCGC
CTCAAGGAGC GGATCCGCGA GATTGCCGAG CGGCTCATGC GGATCGCGGC CGAGCGGCAC
CTGCGCCATG CGCCGATCCT CGAGGCGCCG CATTCGCTCT GGGAGGCCTT CTCGGCCCGC
TTCCCCTATC AAGAGACGGA CGACCAGCTG TCGGCCATCG CGGATGTGGT GAAGGACCTC
GAATCCGGCA GCCCGATGGA CCGGCTCGTG GTGGGCGATG TGGGCTTCGG CAAGACCGAG
GTCGCGATGC GGGCGGCCTT CGTGGCGGCA TTGGCGGGCA TGCAGGTGGC CGTCATCTGC
CCGACCACGC TTCTCGCCCG TCAACATTTC CGCAGCTTTG CCGAGCGCTT CCGCGGCTTT
CCGATGAAGG TGCGTCAACT GTCGCGCTTC GTCTCGGCCA AGGAGGCAGC CGAGACGCGG
GCGGGCCTCG CCGACGGCAC GGTGGATATC TGCATCGGCA CTCACGCGCT TCTGGCCAAG
GGCGTGAAGC TGAAGAACCT CGGGCTCCTC ATCATCGACG AGGAGCAGCA TTTCGGCGTG
TCGCACAAGG AGCGGCTGAA GGAGATGCGC TCCGAGGTCC ATGTGCTGAC GCTGACCGCG
ACGCCCATTC CGCGGACGCT GCAGCTGTCG CTGACGGGCG TGCGGGACCT CTCGATCATC
GCGACGCCGC CCGTGGACCG GCTCGCCATC CGCACCTACG TCTCGGAATT CGACACGGTG
ACGATCCGCG AGGCGCTCCT GCGCGAGCGG TATCGGGGCG GGCAAAGCTT CTTCGTCGTC
CCGCGGCTCT CGGATCTGCC CGACATGGAG GCCTTCCTGC GCGACCATGT GCCTGAGGTC
TCCTATGTGG TGGCGCACGG CCAGCTGGCG GCGGGCGAGC TCGACGAGCG GATGAATGCC
TTCTACGACG GCAAATTCGA CGTGCTTCTG GCGACGACGA TCGTAGAGTC GGGCCTCGAC
ATCCCGACCG CCAACACGAT GATCGTGCAC CGCGCCGACA TGTTCGGGCT GAGCCAGCTC
TATCAGATCC GCGGCCGGGT GGGCCGGGCC AAGACGCGGG CCTATTGCTA TCTCACGACG
AAGCCGCGCG CGCCGCTCAC GCCGCAGGCG ATCAAGCGGC TGCGGCTGCT CGCCAGCCTC
GACAGTCTCG GCGCGGGCTT CAATCTCGCC TCGCACGACC TCGACCTGCG CGGCGCTGGC
AACCTCCTCG GTGAGGAACA ATCGGGCCAT ATCAAGGAGG TGGGCTACGA GCTTTACCAG
CAGATGCTGG AGGAGACGAT CCAGAAGATC CGCTCGGGCG AGCTGCAGGG CCTGAGTGAA
CCCGACGAGC AATGGGCGCC GCAGATCAAC CTCGGCGTCC CCGTGCTGAT CCCCGAGGAG
TTCGTGCCCG ATCTCGACGT GCGGCTCGGG CTTTACCGCA GGCTCTCGGG TCTCACGACC
AAGGTCGAGC TCGAAGGGTT CGCGGCCGAG CTGATCGACC GGTTCGGCCC GCTGCCGCGC
GAGGTCAACA CGCTCCTCCT CGTGGTGCGC ATCAAGGCCA TGTGCAAGCG CGCGGGCATC
TCGCGGCTCG AGACCGGCCC GCGCGGGGCG ACGGTCCAGT TCCACAACGA CAAGTTCGCC
AATCCGGCGG GCCTTGTGGA TTTCATCAAG GCGCAGGGCG AGACGGCGCG GGTGAAGGAC
AACAAGATCG TGCTCGCGCG CGACTGGAAG ACCGAAGGCG AACGGATCAA GGGCGCCTTC
GCCATCGCCC GCGATCTGGC CGAGAAGGTG GTGAAGCCGG AGAAGACCCC CGCCAAGGTC
GCTCGACCTG CGGGCTAG
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| Protein sequence | MQNGTRILLG GAPEGYDARL VAKELDRGAP VIHVARDDKR LEAMRTALAV MAPRAVVLEL
PAWDCLPYDR VSPNPEISAR RMATLAALAH GMPGAFVLLT TLNAATQRIP AREVLRAASF
SARVGDRVDE ERLRSYLARM GFSLTDTVTE PGDYAIRGGI VDIYPPGVAG PVRLDFFGDV
LDGARRFDPE TQRTVEKLDL VELAPVSEVM LDEGAITRFR QNYRIEFGAA GTDDPLYEAV
SAGRKHQGME HWLPFFHARL ETLFDYLPEA SVMLDDQVTP ARISRWEGIA DQYDARREAM
TAKGRLDTVY KPAAPDLLYL DEAAWEAAVA GHRVIQLSPL AQSPGPGVLD AGGRMGRSFA
PERQAENISL FGALVDHVCR LREDRQVVIA SWSEGARERL KGLLEEAGLQ GTKLAQDIRD
VPEGRGGTHL MVWALEQGFT APGLAVISEQ DVLGDRLISK PKKRRKAENF LREHDTLTPG
DLVVHVEHGV GRYMGLETLR VPQPPSNKPG PPHDYLHLVY AEDAKLYLPV ENIELLSRYG
HEEGLLDKLG GGAWQAKKAR LKERIREIAE RLMRIAAERH LRHAPILEAP HSLWEAFSAR
FPYQETDDQL SAIADVVKDL ESGSPMDRLV VGDVGFGKTE VAMRAAFVAA LAGMQVAVIC
PTTLLARQHF RSFAERFRGF PMKVRQLSRF VSAKEAAETR AGLADGTVDI CIGTHALLAK
GVKLKNLGLL IIDEEQHFGV SHKERLKEMR SEVHVLTLTA TPIPRTLQLS LTGVRDLSII
ATPPVDRLAI RTYVSEFDTV TIREALLRER YRGGQSFFVV PRLSDLPDME AFLRDHVPEV
SYVVAHGQLA AGELDERMNA FYDGKFDVLL ATTIVESGLD IPTANTMIVH RADMFGLSQL
YQIRGRVGRA KTRAYCYLTT KPRAPLTPQA IKRLRLLASL DSLGAGFNLA SHDLDLRGAG
NLLGEEQSGH IKEVGYELYQ QMLEETIQKI RSGELQGLSE PDEQWAPQIN LGVPVLIPEE
FVPDLDVRLG LYRRLSGLTT KVELEGFAAE LIDRFGPLPR EVNTLLLVVR IKAMCKRAGI
SRLETGPRGA TVQFHNDKFA NPAGLVDFIK AQGETARVKD NKIVLARDWK TEGERIKGAF
AIARDLAEKV VKPEKTPAKV ARPAG
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