| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_1344 |
|---|
| Symbol | |
|---|
| ID | 4896771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009049 |
|---|
| Strand | + |
|---|
| Start bp | 1393578 |
|---|
| End bp | 1394825 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640111931 |
|---|
| Product | sarcosine oxidase beta subunit family protein |
|---|
| Protein accession | YP_001043226 |
|---|
| Protein GI | 126462112 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0947006 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.025984 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCT ATTCGGTCTT CGCCATCGCC CGCGAGGCGC TGCGCCATCA TACGGGGTGG
GAGCGCGCCT GGGCCTCGCC CGAACCCAAG GCGTCCTATG ACGTGATCGT GATCGGCGCC
GGCGGCCACG GCCTCGCCAC GGCCTATTAC CTCGGGAAGA ATTTCGGGAT CACCAATGTT
GCGGTGATCG AGAAGGGCTG GCTCGGCGGC GGCAATACCG GGCGCAACAC GACGATCATC
CGCTCGAACT ACCTGCAGGA TCCGTCGGCC GCCATCTACG AGAAGGCGCG CAGTCTCTAC
GAGACCCTGA GCCAGGATCT GAACTACAAC GTGATGTTCA GCCCGCGCGG GCTCCTCATG
CTGGCGCAGA CCCATCACGA GGTGCGCGGC TACATGCGCA CGGTGCATGC CAACCTTCTG
CAGGGCGTCG AGACCGAATG GATCGGCCCC GAGCAGGTCA AGCGTCTGGT CCCGATCATG
AACATCCACG GGCCGCGCTA TCCGGTGCTG GGGGCGCTCC TTCAGAAGCG GGGCGGCACG
GCGCGCCACG ATGCGGTGGC CTGGGGCTAT GCGCGGGCCT GTTCGGCGAT GGGCATGGAC
ATCATCCAGC AGTGCGAGGT GAAGGGCGTC CGCTCCGAGG GCGGCGTCGT CACCGGGGTC
GAGACGACGA AGGGCTTCAT CGGCACGAAG AAGCTCGCCA TCGTGGTGGC GGGACATTCG
GGGCAGGTGG CCGAGATGGC AGGCTTCCGG CTGCCGGTCG AGGCGGTGGC GCTGCAGGCG
CTGGTCTCCG AGCCGGTCAA GCCCTGCATC GACGTGGTGG TGATGGCCAA CACGGTGCAC
GGCTACATGA GCCAGTCCGA CAAGGGCGAG CTGGTGATCG GCGGCGGCAC CGACAGTTTC
AACAACTTCA CCCAGCGCGG CAGCTTCCAT CATATCGAGG AGACGCTGCG CGCGCTGGTG
GAGACCTTCC CGATCATCTC GCGCCTCAAG ATGCTGCGGC AGTGGGGCGG GATCGTGGAC
ATGACCGGCG ACCGTTCGCC GATCCTCTCG AAGACGCCGC TGGGGAACTG CTTCATCAAC
TGCGGCTGGG GCACGGGGGG CTTCAAGGCC ATCCCCGGCT CCGGCTGGGC AATGGCGGAG
CTGGTGGCCA AGGGCGAACC GGGCGCGCTT GCCGCGGATT TCGGCATGGA CCGTTTCCGC
GAGGGCCGTT TCATCGACGA ATCGGTCGCG GCGGGGGTCG CGCACTGA
|
|---|
| Protein sequence | MKRYSVFAIA REALRHHTGW ERAWASPEPK ASYDVIVIGA GGHGLATAYY LGKNFGITNV
AVIEKGWLGG GNTGRNTTII RSNYLQDPSA AIYEKARSLY ETLSQDLNYN VMFSPRGLLM
LAQTHHEVRG YMRTVHANLL QGVETEWIGP EQVKRLVPIM NIHGPRYPVL GALLQKRGGT
ARHDAVAWGY ARACSAMGMD IIQQCEVKGV RSEGGVVTGV ETTKGFIGTK KLAIVVAGHS
GQVAEMAGFR LPVEAVALQA LVSEPVKPCI DVVVMANTVH GYMSQSDKGE LVIGGGTDSF
NNFTQRGSFH HIEETLRALV ETFPIISRLK MLRQWGGIVD MTGDRSPILS KTPLGNCFIN
CGWGTGGFKA IPGSGWAMAE LVAKGEPGAL AADFGMDRFR EGRFIDESVA AGVAH
|
|---|
| |