| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_1220 |
|---|
| Symbol | |
|---|
| ID | 4896021 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009049 |
|---|
| Strand | - |
|---|
| Start bp | 1267518 |
|---|
| End bp | 1269887 |
|---|
| Gene Length | 2370 bp |
|---|
| Protein Length | 789 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640111806 |
|---|
| Product | lipopolysaccharide biosynthesis |
|---|
| Protein accession | YP_001043102 |
|---|
| Protein GI | 126461988 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0489] ATPases involved in chromosome partitioning
[COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | [TIGR01007] capsular exopolysaccharide family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.261863 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.356506 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAGCAGT TCGGATTTCG CATCGCCGAC AGCGATCCGC GCATCGATGC GCCTGTGGCT
GCCGTTGCCC CTGCGGACAC GATCGACGTC TCCCGGATCC TCGGAGCCGT GCGCCGGCAA
CGGCGGGTGA TGATGATCTC CTGCGCGATC GGCCTGTGCC TCGGCCTCGT CTATCTCGCG
ACCACGCCGA AGACCTTCGT GGCGAATTCC ACCGTGCTGC TGGCCGGCAA GGTCAACCGG
ACCATCGAAG AAGTGTCGGC CATCGACAGC AGCGCCTCCG AGAACGCGCT CGAAAGCGCG
CAGGAGGTGA TCCGCTCGCA GCCCGTGGCG CTTGCCGTGA CGGACATGCT GAAGCTGACC
GAGAACGAGT CCTTCCTGAA CCGGCCTGTG CCGTTGCTGG CCACCGTGGT CAACGGCGTG
AAGGAGGTCG TGCGCGCGCC GATCCGCCTC ATCACGCCCT CGACGCCCTC CGGCCCCGCA
GGCCCGCCCC CCACGCCGGA GCAGATCGAG CAGCGCAAGC GCCAACTCGT TGCGGACTCG
CTGGCGGCCA AGATCAACGT GATGCGCGTC GGCCGCTCGA GCGTGTTCCA GATCTCCTAT
GCCTCGCACG ACCCGGCCCT CGCGGCCTCG GTCGCCAATG CCTATGCCGA AGCCTATGTC
TCCGACCTGC TGAACGCGAA TTATGACGCG ACGGAGCGCA CGACGGAATG GCTGCGCGAG
CGGCTCGAGG CCCTGCAGTC GCAGGCCCGC GAGGCGGCGG TCGAGGCCGA GATCTTCCGC
GCGGAGAACA ACCTCGTCTC GACGCGCGGG GCGCTCATCA CCGAAGAGAA CGTCTCGAAG
CTGAACGACG ATCTGGCCGC GGCCATGACC GAGGCGGCCC GGGCGCAGGC GCTGATGAGC
ACCTATCAGG AGATCCTCGA CCGCGGACCC GAGGCGTTCC TGTCCGAGCG CAGCAGCGGC
TTCTCGCTGC AGGGCAACGA CCGGCTGATC GAGATGCAGG ACCAGCTGTC GGGCCTGTCC
GCGCGTCTCG ACCGGATCGA GCGCGACTTC GGCGAGGACC ATCCGCAGGC CGTGCGGCTG
CGCGAGCAGG TCTCGGCCCA GATCAACGTC CTCTTCGGCG AAGTGCGCCG TCTGCACGAG
GAAGCGCGCG GCTCCTACAA CGTGGCCAGC GCTCAGGTGC AGGCCCTGCG CGAGAGCCTC
GGGCTCGCGG TCGACGTGAA CTCCGAAGCC GGGCGCAAGC AGGTGCAGCT GAAGTCGCTG
GAACAGCGGG CCGAAACGCT GCAGACGCTC TACCAGACCT TCCTGACCCG CTTCCAGGAG
ATCGACCAGC AGAAGAGCTT CCCGATCTCG AACGTCCGCA TTCTTGCCCA TGCCGACGTG
CCGCTCACGC CCGCGGGGCC GAGCACGATG CGCGTCCTCG CGGTGATGCT GGTGCTGGGC
GGCATGGCGG GCGCGGGCAT CGGCGCGCTG CGCGAATGGC GCGACCGGTT CCTGCGCACC
GGAGAGGATG TGCAGAACGA CGTGGGCCAG CGGTTCCTCG GCTACCTGCC CCACTTCGAT
GCGGCGAACG GTGCACCGCA GCTGTCGCGG CAGGCCCGCA ACGCGCCGCT GAAGCTGAAC
GAGCCGGTGC CGGGTCTTCC GGTCGTGCGC AAGCCGATCC ATGCGCTGCA GCATCCGCGC
TCGCACTATG CCGAGACCCT GCGCAACATC CGCTTCTCCT CCGAGGTGAG CCTCGCGGGC
AAGTCGCAGA TCGTGATGGG GATCACCTCG ATCCGGCCGG GCGAGGGCAA ATCCTCGGTC
GCGCTGAACC TGGCCGCGGT GATGGCGGCC TCGGGCAATT CGGTGCTGCT GATCGACACC
GACCCGCGCA ACCCGGGCCT CAGCCGCCGG CTCGGCCTGA CGCGCGGCGT GGGCCTCGTC
GAGGCTGCGC TCGGCCGGGC CGACTGGACC AAGGCCCTGC GGGTGATCGG CGACAGCGGC
GTGCATCTGC TGCCCTGCAT CACCCCCGGC ATGATGACCC ATTCCAGCGA GATGCTGGGT
TCCAAGGGTA TGCGGCAGCT TCTGGCCGCG GCCCGGGCCC GCTACAGCCA CGTCATCCTC
GACCTCGCGC CGCTCGGCCC GGTGGTCGAT GCCCGCGTGG TGGTGCCGAT GGTCGATCAG
GTCGTGATGG TGGCGGAGTG GGGCAAGACG CCCAAGGCGC TGCTGCGCGA GACGCTGATG
AACGAGCCCG CACTCATGGA GAAGACCCTC GGCGTGGTGC TGAACAAGGT CGACATGGAG
TCGCTGCGCG ACTACGTCCC GCAGACCGGC GGCGAGCATT ATTACGAGGA ATATGGCGAC
TACTTCTCGG GCCGCAGCGG CACGAGCTGA
|
|---|
| Protein sequence | MKQFGFRIAD SDPRIDAPVA AVAPADTIDV SRILGAVRRQ RRVMMISCAI GLCLGLVYLA
TTPKTFVANS TVLLAGKVNR TIEEVSAIDS SASENALESA QEVIRSQPVA LAVTDMLKLT
ENESFLNRPV PLLATVVNGV KEVVRAPIRL ITPSTPSGPA GPPPTPEQIE QRKRQLVADS
LAAKINVMRV GRSSVFQISY ASHDPALAAS VANAYAEAYV SDLLNANYDA TERTTEWLRE
RLEALQSQAR EAAVEAEIFR AENNLVSTRG ALITEENVSK LNDDLAAAMT EAARAQALMS
TYQEILDRGP EAFLSERSSG FSLQGNDRLI EMQDQLSGLS ARLDRIERDF GEDHPQAVRL
REQVSAQINV LFGEVRRLHE EARGSYNVAS AQVQALRESL GLAVDVNSEA GRKQVQLKSL
EQRAETLQTL YQTFLTRFQE IDQQKSFPIS NVRILAHADV PLTPAGPSTM RVLAVMLVLG
GMAGAGIGAL REWRDRFLRT GEDVQNDVGQ RFLGYLPHFD AANGAPQLSR QARNAPLKLN
EPVPGLPVVR KPIHALQHPR SHYAETLRNI RFSSEVSLAG KSQIVMGITS IRPGEGKSSV
ALNLAAVMAA SGNSVLLIDT DPRNPGLSRR LGLTRGVGLV EAALGRADWT KALRVIGDSG
VHLLPCITPG MMTHSSEMLG SKGMRQLLAA ARARYSHVIL DLAPLGPVVD ARVVVPMVDQ
VVMVAEWGKT PKALLRETLM NEPALMEKTL GVVLNKVDME SLRDYVPQTG GEHYYEEYGD
YFSGRSGTS
|
|---|
| |