Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17029_0554 |
Symbol | |
ID | 4897310 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17029 |
Kingdom | Bacteria |
Replicon accession | NC_009049 |
Strand | - |
Start bp | 580221 |
End bp | 581678 |
Gene Length | 1458 bp |
Protein Length | 485 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640111139 |
Product | type II secretion system protein E |
Protein accession | YP_001042442 |
Protein GI | 126461328 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTCTCGC GTTATCGCAA GTCGCCCGAC GGGCCGAAGA CTGCGCCCTC GGCGGCGGTG GGGGCGGCGA CGCCCTCGGT CACGGCCCCC GCCGCGCCTG CGCCGGCCAG GCCCGCGGCC CCGCCCCGCC CGGGGCCCGC GGCGCCGCGC ACGGGCGCCG AGGCGATCGC CAGCGACAAG GAGAAGAAGC GCAAGGAACG GCTGATGGAG CTCAAGGTCG AGCTGCACCG CCGGCTGCTC GACGACCTCA ACCTTGCCGC CCTCGAAACC GCCTCGGAAT CGAGCCTGCG GAGCGAGATC GCGGCCATCT GCGGCGAGGC GCTCGAGGAG ATGAGCGTCG TTCTGAACAA GGACGAACGC GCGATCCTCA ATCAGGAGCT CTACGACGAG GTGATGGGCC TCGGCCCGCT CGAACCGCTC CTGAAGGATG AGACGATCAA CGACATCCTC GTGAATGGCC CCTACCGGAT CTTCGTTGAG CGGGGCGGCA AGCTCGAGCT GACCGACACG ACCTTCAAGG ACGAGCGCCA CCTCCTGCGG ATCATCGACA AGATCGTCTC GGCGGTGGGC CGGCGGGTGG ACGAATCGAC CCCTTACGTC GACGCGCGTC TGGCCGACGG GTCGCGCTTC AACGCCATGG TGCCGCCCAT CGCGGTTGAC GGCTCGCTCG TCTCGATCCG GAAGTTCAAG AAGGACAAGC TCGGCATCGC CGATCTCGTG CGCTTCGGCG CCTTCACCGA GGAGATGGCG GCCTACCTTC AGGCCGCCGT GGCCACGCGG CTCAACATCA TCGTCTCGGG CGGCACCGGC TCGGGCAAGA CCACGACGCT GAACGCGCTG TCGTCCTTCA TCGACGATTC CGAGCGGATC CTGACCATCG AGGATACGGC CGAGCTCCAG CTGCAGCAGG CCCATGTCGG CCGGATGGAG AGTCGGCCCC CGAACGTCGA GGGCAAGGGC GCGGTGACGC AGCGCGACTG TCTGAGGAAC GCGCTGCGGA TGCGGCCCGA CCGGATCATC GTGGGCGAGA CCCGCGGCGA GGAGGTCATC GACATGCTGC AGGCGATGAA CACCGGCCAC GACGGCTCCA TGACCACGAT CCACGCCAAC TCCGCGCGCG ACGGCATCAG CCGGCTAGAG AACATGGTGG CGATGGCCGG GATCGAGATG CCGATCAAGG CGGTGCGCGC GCAGATCGCC TCGGCCGTCA ACCTGATCGT GCAGGCCAGC CGCCTGCAGG ACGGCTCGCG CCGGATGGTC TCGATCACCG AGATCACCGG AATGGAGGGC GACGTCATCT CGATGCAGGA GATCTTCCGC TACGAGCGGC TGGGGGTCGA GCCGTCGGGC AAGATCATCG GCCGGTTCAA TGCGACGGGC GTGCGCTCGC ACTATTCCGA CCGCTTCCGC CAGTGGGGCT ACATCCTGCC CGCCACCATC TACGACCCCA TTCCCTGA
|
Protein sequence | MFSRYRKSPD GPKTAPSAAV GAATPSVTAP AAPAPARPAA PPRPGPAAPR TGAEAIASDK EKKRKERLME LKVELHRRLL DDLNLAALET ASESSLRSEI AAICGEALEE MSVVLNKDER AILNQELYDE VMGLGPLEPL LKDETINDIL VNGPYRIFVE RGGKLELTDT TFKDERHLLR IIDKIVSAVG RRVDESTPYV DARLADGSRF NAMVPPIAVD GSLVSIRKFK KDKLGIADLV RFGAFTEEMA AYLQAAVATR LNIIVSGGTG SGKTTTLNAL SSFIDDSERI LTIEDTAELQ LQQAHVGRME SRPPNVEGKG AVTQRDCLRN ALRMRPDRII VGETRGEEVI DMLQAMNTGH DGSMTTIHAN SARDGISRLE NMVAMAGIEM PIKAVRAQIA SAVNLIVQAS RLQDGSRRMV SITEITGMEG DVISMQEIFR YERLGVEPSG KIIGRFNATG VRSHYSDRFR QWGYILPATI YDPIP
|
| |