| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_0425 |
|---|
| Symbol | |
|---|
| ID | 4896036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009049 |
|---|
| Strand | + |
|---|
| Start bp | 440129 |
|---|
| End bp | 441829 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640111009 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001042313 |
|---|
| Protein GI | 126461199 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAACA TCCTGATGCG GCCGGTTCTG GCTCTGGCGC TCGCGGCGCT CCTGCCGGCG
GCGGCCGGGG CGCAGCAGGA GGATGCGGGC GCCTATCTGG CCGCGCGCGT GGCGGCCGCA
GGCAGCGACT ACCGCGCGGC GGCCGACTGG TTCACCCGGG CTCTGGCCGC GGATCCCTCC
AACACCAGCC TGATCGAGGG CGCGCTGATC TCGGACTTCT CGCTGGGCGA GATCGAGAAG
GCGGTGCCAC TCGCCACGCG CCTGACCGAG AGCGGCAACG GGGCGCAGGC CGCGGCGCTC
GTCCTGCTCG CCGACCGGGC CAAGCGCCAG GAGTATCAGG CCATCCTGAC GGCCGAGCCC
ACGGGTCTCG GCCCGCTGGT CGACCGGCTG TCCTTCGCCT GGGCGGCCTT CGGCGCGGGC
CGGATGTCCG AGGCGCTCGA AGCCTTCGAT CAGCTCGCCA CCACGCAGGG GCTCGAGCCC
TTCGGTCTCT ATCACAAGGC GCTGGCGCTG GCCGCCGCGG GCGATTTCGA GGGCGCGGAC
GAGATCCTGT CGGGGCGCGA CGGCAATGCG CTGCGCGTCA TGCGCCGCGG CTCCATTGCG
CATGCCCAGA TCCTGAGCCA GCTCGACCGG AACGCCGATG CGGTGGCGAT GCTGGAGAAG
AGCTTCGGCA CCGACGCCGA TGCGGGCATC GACGCGCTGA AGGAACGGCT CGCGGCGGGC
GAGACGCTGC CCTATGACGT GGCGCGCAAC GCGACCGACG GCATGGCCGA GATCTTCTTC
ACGCTCGCGG GCGCGCTGAG CGGCGAGGTC GACGACGGCT CGACCCTGCT CTACGCCCGC
ACGGCCACCC ATCTGCGCCC CGACCATACC GAGGCCCTGC TGCTCTCGGC GCAGATCCTC
GACAATCAGG GCCAGCATCA GCTTGCCTCC GAGACCTATG CCCGGATCCC GACCGCGGAT
CCGATGTTCT TCGTGGCCGA GATCGGGCGC GCCGACGCGC TGCGGGCCGA CGGCAAGATC
GAGGCCTCGC TCGAGGTGCT GCAGGGGCTC GCGCGTTCGA AGCCCGAGCT GATGCAAGTC
CATCTCGCGC TCGGCGACGC GCTGCGGCGC GAGGAACGCT ATGCGGATGC GGTCAAGGCC
TATGATGCGG CGATTGCGCG CGTGCCCGCG CCGGAGCGCC AGCACTGGCC GCTGTTCTAC
AGCCGCGGCA TCTGTCACGA GCGGCTCTCG CACTGGAAGG AGGCCGAGGC CGACTTCCGC
CGCGCGCTCG AACTCAATCC CGACGAGCCG CAGGTGCTGA ACTACCTCGG CTATTCCTTC
GTGGACCGCG GCCAGAATCT CGAGGAGGCG CTCTCGATGA TCGAGCGCGC CGTCGCCGCG
CGGCCCGAGA GCGGCTATAT CATCGACAGC CTCGCCTGGG CCTATTTCCG GCTCGGCCGC
TATCAGGATG CGGTGGAACC GATGGAGAAG GCCTCGCTGC TCGAGCCGGT CGATCCGATC
GTCACCGACC ATCTGGGCGA TGTCTATTGG GCCGTGGGCC GCAAGCTCGA AGCCCGTTTC
CAGTGGCACC GCGCCCTGTC CTTCGATCCC GAGGAGAAGG AGGCGCAGCG CATCCGCCGC
AAGCTCGAGG TCGGCCTCGA TGCGCTTCTG GCGGAGGAAG GTGCGAAACC CCTGTCGGTA
GCCGTAAGAG CGAATGACTG A
|
|---|
| Protein sequence | MANILMRPVL ALALAALLPA AAGAQQEDAG AYLAARVAAA GSDYRAAADW FTRALAADPS
NTSLIEGALI SDFSLGEIEK AVPLATRLTE SGNGAQAAAL VLLADRAKRQ EYQAILTAEP
TGLGPLVDRL SFAWAAFGAG RMSEALEAFD QLATTQGLEP FGLYHKALAL AAAGDFEGAD
EILSGRDGNA LRVMRRGSIA HAQILSQLDR NADAVAMLEK SFGTDADAGI DALKERLAAG
ETLPYDVARN ATDGMAEIFF TLAGALSGEV DDGSTLLYAR TATHLRPDHT EALLLSAQIL
DNQGQHQLAS ETYARIPTAD PMFFVAEIGR ADALRADGKI EASLEVLQGL ARSKPELMQV
HLALGDALRR EERYADAVKA YDAAIARVPA PERQHWPLFY SRGICHERLS HWKEAEADFR
RALELNPDEP QVLNYLGYSF VDRGQNLEEA LSMIERAVAA RPESGYIIDS LAWAYFRLGR
YQDAVEPMEK ASLLEPVDPI VTDHLGDVYW AVGRKLEARF QWHRALSFDP EEKEAQRIRR
KLEVGLDALL AEEGAKPLSV AVRAND
|
|---|
| |