| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_85761 |
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| Symbol | RPT4 |
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| ID | 4840925 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009048 |
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| Strand | - |
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| Start bp | 599214 |
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| End bp | 600532 |
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| Gene Length | 1319 bp |
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| Protein Length | 416 aa |
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| Translation table | 12 |
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| GC content | 43% |
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| IMG OID | 640392240 |
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| Product | 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal cap subunit) |
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| Protein accession | XP_001386708 |
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| Protein GI | 126140372 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1222] ATP-dependent 26S proteasome regulatory subunit |
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| TIGRFAM ID | [TIGR01242] 26S proteasome subunit P45 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.341718 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.159026 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | CACTTTTCCT CTACATCACA TTTGACCTCC ACTATGAGCG AAGAAAACGA TCCACTTTTG
GCGGCTCTCA ATGCTGACGA AAATGACAAT GCCTCTGAAC AACCTCAACA ACCAGCTGAT
CCAGAGAGAG ACAGAGCACT TTCCAGATTC AAGGACAAGT TGCTTGAACA CCGTAAATGG
GATTCACGCT TGAAAGAACT TCGTCTCAGC ATACGAGAAT TGGACAACGA CTACGAAAGA
ACGGAAAATG ACATCAAAGC TTTGCAATCA GTTGGTCAGA TCATAGGGGA GGTGTTGAAA
CAGTTGGATG AAGAAAGATT CATTGTTAAG GCTTCTTCTG GACCTCGTTA CATTGTAGGC
TGTCGTAATA CGATCAAGAA AGAAAGCTTG AAGAACGGTG TAAGAGTCTC TTTGGATATG
ACTACATTGA CAATCATGAG AATATTGCCT CGAGAAGTTG ACCCCTTGGT GTACAACATG
ACGACTTTTG AACCAGGTGA AATCTCCTTC AATGGAATTG GTGGTTTAAC AGAACAGATT
CGTGAATTAC GTGAAGTAAT CGAGTTGCCT TTGAAGAATC CTGAGTTGTT CCATAGAGTC
GGCATCAAGC CTCCAAAGGG TGTACTTTTA TACGGTCCTC CTGGTACCGG TAAGACGTTG
TTAGCTAAGG CTGTAGCAGC CACCATTGGA GCCAACTTCA TTTTCTCACC TGCTTCGGCC
ATTGTAGACA AGTATATCGG AGAATCGGCC AGATTGATCA GAGAGATGTT TGCATATGCC
AGAGAGCATG AACCCTGCAT TATCTTTATG GACGAAGTGG ATGCCATTGG TGGCCGTAGA
TTCAGTGAAG GTACTTCTGC CGATAGGGAA ATCCAGAGAA CTTTGATGGA ATTGTTGAAC
CAGATGGATG GATTTGACAC TTTGGGCCAG ACCAAGGTGA TCATGGCAAC TAACAGACCA
GATACCTTAG ATCCAGCATT GTTGAGAGCA GGTAGATTGG ACAGAAAGAT CGAGATTGGA
TTACCAAATG AAGCTGGAAG ATTGGAGATC TTCAAGATCC ACACTGCCAA AGTAGCCAAA
CAAGGTGAGT TTGACTTTGA AGCAGCGGTC AAGATGAGTG ATGGCTTCAA TGGTGCCGAT
ATCAGAAATG TAGTCACGGA AGCGGGTTTC TTCGCCATCA GAGATGACAG AGACTATATA
TTGCAAAATG ATTTGATGAA GGCGGTCAGA AAGGTTGCTG ATGTGAAGAA GTTGGAAGGC
AAGTTAGACT ACGAAAAGTT GTGATGTAAT ATAGTAATAA TAAGAATGCG CAATGTTGT
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| Protein sequence | MSEENDPLLA ALNADENDNA SEQPQQPADP ERDRALSRFK DKLLEHRKWD SRLKELRLSI
RELDNDYERT ENDIKALQSV GQIIGEVLKQ LDEERFIVKA SSGPRYIVGC RNTIKKESLK
NGVRVSLDMT TLTIMRILPR EVDPLVYNMT TFEPGEISFN GIGGLTEQIR ELREVIELPL
KNPELFHRVG IKPPKGVLLY GPPGTGKTLL AKAVAATIGA NFIFSPASAI VDKYIGESAR
LIREMFAYAR EHEPCIIFMD EVDAIGGRRF SEGTSADREI QRTLMELLNQ MDGFDTLGQT
KVIMATNRPD TLDPALLRAG RLDRKIEIGL PNEAGRLEIF KIHTAKVAKQ GEFDFEAAVK
MSDGFNGADI RNVVTEAGFF AIRDDRDYIL QNDLMKAVRK VADVKKLEGK LDYEKL
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