| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_85570 |
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| Symbol | CDR1 |
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| ID | 4841049 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009048 |
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| Strand | + |
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| Start bp | 176517 |
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| End bp | 181396 |
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| Gene Length | 4880 bp |
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| Protein Length | 1505 aa |
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| Translation table | 12 |
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| GC content | 45% |
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| IMG OID | 640392364 |
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| Product | Multidrug resistance protein |
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| Protein accession | XP_001386431 |
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| Protein GI | 150866738 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
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| TIGRFAM ID | [TIGR00956] Pleiotropic Drug Resistance (PDR) Family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.408248 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATCTGTCGAA CCCTACTTAA TACCAGACTT CAATTCACTA CTGTCGGTAG CTTGAATTGA
CATAAATACC TTAACCGCGT CGCTCTCAGA ACGAGACGGA TCCACAGGTG TAGCTGGAAC
CACAACTTTT TGTCCGAAAG CAACGCTTGC CAGACTCCAA CTGCCTCTCC GTCTTTTTGT
CCAAAGCAAT CGATATTTTC GAACTACAAT ACAGACTTTT ATTTTCAGTC TTTTTTTAAA
CGCAGCCTGA TTTTGCAATC GAATCTGGGT GCAAATAGAT TTCAATTTCA TAGCATTTTT
CTCAATACCC CCCTCCCGAA GCTTAATAGA ACATCTACAA CATGTCCGAT GCCTCTATAG
GGAAAGAATC CCAGGAACAG AAGAAGAACA TCCCATCCAA CTCGTCCACC GTGTCAGACA
CATCTTCCAT CAACGAATAC CAGGGTTTCA ACAGATCCAC TGCTGCTGAT GTGCAAGAAC
TCGCCAGAAC AATCACCCAT GAGTCATACA CCTTTGAAAA CGGTGCCGGT GTCGGCTTGC
CAGACCAGGC CTCCTCCATC GGTCTTATCA AGTACTTGTC GCACATGTCG CAAGTGCCAG
GTGTCAACCC ATATGTTGAA GAAGAGACTA ATCCGGAATT AGACCCCAAC AGCGAGTCGT
TCAATGCCAA GTTCTGGGTC AAGAATTTGA GGAAGTTGTA CGACTCCGAT CCCGAGTACT
ACCAGCCTTC CAAGTTGGGT ATTGCCTACC GTGACTTGAG AGCCTATGGT GTCGCTGCTG
ACTCCGACTA CCAACCTACT GTGACCAATG CCATCTGGAA ATTCGCTGTA GAAACTTCTA
GAACGTTCCA AAAAGAAGAT CCTTCGCGTT ACTTCGACAT TTTGAAGCCT ATGGATGCCA
TAATGAAGCC TGGTGAAGTC ACCGTCGTCT TGGGAAGACC TGGTTCTGGA TGTTCGACTT
TGTTGAAGAC CATTTCTGCC CATACCTACG GTTTCCATGT TGGCGAAGAA TCGAGAATCA
CCTACGACGG GTTATCGCCT CAAGATATCG TTGACAACCA CCGTGGTGAT GTCGTATATT
CGGCTGAAAC TGATGTCCAT TTCCCTCACT TAACTGTAGG AGACACCTTG GAGTTCGCAG
CCAGATTGAG AACTCCCCAG AACAGAGGTC TCGGCGTCGA CAGAGAAACC TACGCTAAGC
ACATGGCCAG TGTATACATG GCCACATACG GGTTATCTCA TACCAGAAAT ACCAACGTCG
GTAATGACTT CGTTAGAGGT GTTTCTGGTG GTGAAAGAAA AAGAGTCTCT ATTGCCGAAG
TATCGTTGTC AGGTGCCAAC TTGCAATGTT GGGATAACGC TACCAGAGGT TTGGATGCCG
CCACTGCTTT GGAATTCATC AGAGCCTTGA AAACTTCGGC CACTATTTTA GAAGCCACAC
CTTTGATTGC TATCTACCAG TGTTCCCAAG ATGCCTACGA TTTATTCGAT AACGTGGTAT
TGTTGTACGA GGGCTACCAG ATCTTCTTTG GTAAAGCTGA AGATGCTAAG ACATTCTTCG
TCAACATGGG TTACGAATGT CCACAAAGAC AGACTACTGC CGATTATTTG ACTTCTTTGA
CTAACCCTGC TGAAAGAATC GTCATTCCAG GCTACGAGAA CTCGGTACCT AGAACAGCCA
AGGAGTTCGA AGCCTACTGG AAGAGCTCTC CAGAGTACAA ATCCTTGGTT GAAGAAATTG
AGCAGCATTT TCAAGATGTT GAAACCAATA ACGTCAAACA ATCATACCTC GATTCTCACG
TTGCCAAACA GTCGAAACAC CTCTCGCCAA AGTCGCCATA CACCGTTTCG TTCTTCATGC
AAGTCAGATA CATCATGGGA AGAAACTTTT TAAGACTTAA GGGTGATCCT TCCATTGCTA
TTTTCTCAGT CTTTGGTCAA GGTGTTATGG GTTTGATCTT GTCTTCTGTG TTCTACAACT
TGAGTCAAAC CACTGAGTCC TTTTACTACA GAGGTGCTGC TATGTTCTTT GCTGTGTTAT
TCAATGCGTT TGCCTCTCTT TTGGAAATCA TGTCTCTTTT TGAAGCCAGA CCTATCGTTG
AAAAGCATAA GAAATACGCT CTTTATCGTC CTTCTGCCGA TGCTCTAGCT GGTATCATTA
CAGAATTACC TACTAAGTTG TGTATGTCTG TTTCGTTCAA CTTCGTCTTC TATTTCATGG
TCAACTTCAG AAGAACACCT GGTAACTTCT TCTTCTATTG GTTGATGGCT GGTTGGTGTA
CGTTGGTGAT GTCACACTTG TTCAGATCAT TGGGTGCTGT GTCTACGTCT TTGGCTGGTG
CCATGACTCC TGCTACTGTT TTGTTACTTG CCATGGTTAT TTACACTGGT TTCGTCATTC
CTACTCCAAA GATGTTGGGT TGGTCCAGAT GGATCAACTA TATTAATCCC GTGGGTTATG
TGTTCGAGTC GTTGATGGTC AACGAGTTCC ACGAACGTGA CTTTGAATGT GCCACTTTTG
TTCCAACGGG TCCTAACTAT GTGAACGTAC CTGAAGATGC CAGAGTCTGC AATACTGTTG
GTGCCAGACC CGGCTCGAAC ATCGTTCTGG GTACCGACTA CCTTGCTCTT TCGTACCAGT
ACTACCACTC TCACAAGTGG AGAAATCTCG GTATCACTAT TGCCTTTGCT GTTTTCTTCT
TATTTGTCTA CATTGCGTTG ACTGAGTTCA ACAAGGGTGC CATGCAAAAG GGTGAAATTA
CCTTGTTCCT TAGAGGCTCA TTGAAGAAGC ACAAGAAGGA AGCCAAGAAA GGTAAGGCTA
ACGTGGCTGA CATTGAAACC GCTGACACGA ACGAAAAGAT TGGTTTCAGT GACGAATTGG
ATGCCACTAA GAACAAATCG AGTTCCAACT CTGGCGATAA CTCCTTGCCT TCTTCTAAAG
ACATTTTCCA TTGGAAGGAC TTGACCTATC AAGTGAAAAT CAAGAGTGAG GAGCGTGTTA
TCTTAAACCA CTGTGACGGT TGGGTTAAAC CAGGCCAATT GACTGCTTTG ATGGGTTCTT
CTGGTGCAGG TAAGACTACG CTTTTGAACT GTTTGTCTGA AAGAGTCACT ACTGGTGTTA
TCACTGATGG TGTCAGAATG GTTAATGGTC ACTCTTTGGA TTCTTCTTTC CAGAGATCCA
TTGGTTATGT CCAGCAACAG GATTTGCATC TTCCTACCTC GACTGTCCGT GAAGCCTTGA
GATTCTCCGC CTACTTGAGA CAACCCAATT CGGTTTCAAA GAAGGAAAAG GAAGAATACG
TTGAATACAT CATCGACTTG TTGGAAATGT ACGACTACGC TGACGCTTTG GTTGGTGTTG
CCGGTGAAGG TTTGAATGTT GAACAGAGAA AGAGATTGAC TATCGGTGTT GAATTGGTGG
CCAAACCCAA ATTGTTGTTG TTTTTGGATG AGCCTACTTC TGGTTTGGAT TCGCAAACTG
CCTGGTCCAT TTGTAAGTTG ATGAGAAAGT TGGCAGACCA TGGTCAAGCA ATTTTGTGTA
CTATCCATCA GCCCTCTGCT CTTTTGTTGA AGGAATTTGA CCGTTTGTTG TTCTTGCAAA
GTGGTGGTCA GACTGTGTAC TTTGGAGACT TGGGTGAAAA CTGTTCTACC TTGATTGAAT
ACTTCGAGAA ATACGGTTCT CACCCATGTC CTAAGGAAGC TAACCCTGCC GAATGGATGT
TGGAAGTTGT CGGTGCTGCT CCTGGTTCCC ACGCTAATCA GGACTACCAT GAAGTCTGGA
AGAACTCTAC CGAATACAAG GACGTGCACG AGGAGTTGGC TAAAATGGAA AGAGAATTGG
TTTTGCTTCC AAAGGATGAC TCACCAGACT CGCACTTGAA ATACGCTGCT CCAATCTGGA
AGCAATACTT GATCGTTTCG GCTAGAGTCA TCCAACAAAA CTGGAGATCG CCTGGCTACA
TCTACTCCAA GTTGTTCTTG GTATTGTCTT CTGCTCTTTT CAACGGTTTC TCTTTTTTCA
AGGCTGACAG ATCGATGCAA GGTTTGCAAA ATCAAATGTT TGCCATCTTT ATGTTCTTCA
TTCCTTTCAA CACCTTGGTG CAACAGATGT TGCCTTACTT TGTTAGACAG AGAGATGTCT
ACGAAGTGAG AGAAGCTCCT TCCAGAACAT TCAGTTGGTT TGCCTTTATT ACTGGCCAGA
TCACTGCTGA AATCCCATAC CACGTTGCTG TCGGTACTTT ATCATTCTTC TGCTGGTACT
ACCCTGTTGG ACTCTACCAG AATGCAGTCC CAACCGACCT GGTTAACTCT CGTGGTGTCC
TCATGTGGTT GTTACTTACG AGTTTCTTTG TCTACTCCGG TACCATGGGT CAGTTGTGTA
TGGCCTTCAA CGAATTGGCC GACAACGCTG CTAACTTGGC TACATTGTTG TTCACCATGT
GTTTGAACTT CTGTGGTGTC TTAGCTGGAC CTGATGTGTT GCCCGGCTTC TGGATTTTCA
TGTACAGAGC CAACCCCTTC ACATACTTGA TCCAGGCTAT TTTGTCTACT GGTTTGGCCA
ACACTTCAGT AGTCTGTTCT CCAAATGAGT TGGTTCCTTT GAACCCTCCT AATGGTCAAA
CTTGTTTGGA ATACATGCAA CCCTACATCG ACGCTACTGG AGGTTACTTA GTTGACGAGA
ATGCCACATC AGGATGTCAA TTCTGTCAAA TGGCAAAAAC CAACGATTTC TTGAAGTCTG
TCAACGCCTT GTACTCTGAA AGATGGAGAA ACTTCGGTAT TTTCATTGCC TTCATTGCCA
TCAACATCAT CTTGACTGTT GTATTCTACT ATTGGGCCAG AGTTCCAAAG GGTACCAGAC
AAAAGAAGTC GTCCAAGTAG
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| Protein sequence | MSDASIGKES QEQKKNIPSN SSTVSDTSSI NEYQGFNRST AADVQELART ITHESYTFEN
DQASSIGLIK YLSHMSQVPG VNPYVEEETN PELDPNSESF NAKFWVKNLR KLYDSDPEYY
QPSKLGIAYR DLRAYGVAAD SDYQPTVTNA IWKFAVETSR TFQKEDPSRY FDILKPMDAI
MKPGEVTVVL GRPGSGCSTL LKTISAHTYG FHVGEESRIT YDGLSPQDIV DNHRGDVVYS
AETDVHFPHL TVGDTLEFAA RLRTPQNRGL GVDRETYAKH MASVYMATYG LSHTRNTNVG
NDFVRGVSGG ERKRVSIAEV SLSGANLQCW DNATRGLDAA TALEFIRALK TSATILEATP
LIAIYQCSQD AYDLFDNVVL LYEGYQIFFG KAEDAKTFFV NMGYECPQRQ TTADYLTSLT
NPAERIVIPG YENSVPRTAK EFEAYWKSSP EYKSLVEEIE QHFQDVETNN VKQSYLDSHV
AKQSKHLSPK SPYTVSFFMQ VRYIMGRNFL RLKGDPSIAI FSVFGQGVMG LILSSVFYNL
SQTTESFYYR GAAMFFAVLF NAFASLLEIM SLFEARPIVE KHKKYALYRP SADALAGIIT
ELPTKLCMSV SFNFVFYFMV NFRRTPGNFF FYWLMAGWCT LVMSHLFRSL GAVSTSLAGA
MTPATVLLLA MVIYTGFVIP TPKMLGWSRW INYINPVGYV FESLMVNEFH ERDFECATFV
PTGPNYVNVP EDARVCNTVG ARPGSNIVSG TDYLALSYQY YHSHKWRNLG ITIAFAVFFL
FVYIALTEFN KGAMQKGEIT LFLRGSLKKH KKEAKKGKAN VADIETADTN EKIGFSDELD
ATKNKSSSNS GDNSLPSSKD IFHWKDLTYQ VKIKSEERVI LNHCDGWVKP GQLTALMGSS
GAGKTTLLNC LSERVTTGVI TDGVRMVNGH SLDSSFQRSI GYVQQQDLHL PTSTVREALR
FSAYLRQPNS VSKKEKEEYV EYIIDLLEMY DYADALVGVA GEGLNVEQRK RLTIGVELVA
KPKLLLFLDE PTSGLDSQTA WSICKLMRKL ADHGQAILCT IHQPSALLLK EFDRLLFLQS
GGQTVYFGDL GENCSTLIEY FEKYGSHPCP KEANPAEWML EVVGAAPGSH ANQDYHEVWK
NSTEYKDVHE ELAKMERELV LLPKDDSPDS HLKYAAPIWK QYLIVSARVI QQNWRSPGYI
YSKLFLVLSS ALFNGFSFFK ADRSMQGLQN QMFAIFMFFI PFNTLVQQML PYFVRQRDVY
EVREAPSRTF SWFAFITGQI TAEIPYHVAV GTLSFFCWYY PVGLYQNAVP TDSVNSRGVL
MWLLLTSFFV YSGTMGQLCM AFNELADNAA NLATLLFTMC LNFCGVLAGP DVLPGFWIFM
YRANPFTYLI QAILSTGLAN TSVVCSPNEL VPLNPPNGQT CLEYMQPYID ATGGYLVDEN
ATSGCQFCQM AKTNDFLKSV NALYSERWRN FGIFIAFIAI NIILTVVFYY WARVPKGTRQ
KKSSK
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