| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_79721 |
|---|
| Symbol | KGD1 |
|---|
| ID | 4840878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009048 |
|---|
| Strand | + |
|---|
| Start bp | 238081 |
|---|
| End bp | 241390 |
|---|
| Gene Length | 3310 bp |
|---|
| Protein Length | 1015 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640392193 |
|---|
| Product | alpha-ketoglutarate dehydrogenase |
|---|
| Protein accession | XP_001386444 |
|---|
| Protein GI | 150866747 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR00239] 2-oxoglutarate dehydrogenase, E1 component
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0668593 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | AAATTTTGCT TTGTTTTCTT TTCCTCAAAA CTGGCGAACG AATTGTTTCA AGGACGTTTC
TAGGAACACT CCTCATCACC AAAGTCATTA TGCTCAAGGC TTTTAGAAAT GTCGTGCCTC
GCGGCCAGCT CTTGCGGGCT CTGGCCAGGC CATCCCTCAG ATCGATGGCT CCTTTGACAT
CTTCCACATC CATCAGATCC ACCAACTCAA TCCGTTGCTT TGCAACTGGA ACCGACTCTT
TCTTGCAGGG AAACAACTCC AACTACATTG ACGAAATGTA CGATGCCTGG AGACAAGACC
CTTCATCGGT GCATGCCTCC TGGAACGCCT ACTTCAAGAA CATTGAGTCC TCTAACATTC
CGCCCTCGCA GGCTTTCCAG GCTCCTCCTA CTATCGTTCC TACCGTTAGT GGCGGTGCTG
CCGGCTTTGT CCCTGGTTCT AACCCCATCA GTGAGGATGT TGTCACTCAT TTGAAAGTGC
AATTGTTGGT CCGTGCTTAT CAAGTCAGGG GTCATCAGAA GGCCAAGATC GACCCATTGG
GTATCTCGTT TGGCGACAAC AGCGATACCC CCAAGGAGTT GACCTTGGAC TATTATGGCT
TCACAGATGT CGACTTGAAC AAGCAAATCA CCTTGGGTCC AGGTATCTTG CCTAGATTCG
CTGAAGCCGG CAAGAAGTCA TTGACATTGC GCGAAATCAT CGAGAACTGT GAAAAGCTTT
ACTGTCAATC TTACGGTGTC GAGTACGTTC ACATCCCTTC CAAGGAGCAA TGTGATTGGT
TGAGAGAGAG AATCGAAATT CCACAACCTT TCAAGTACTC CGCTGACCAG AAGAGACAAA
TCTTGGACCG TTTGATCTGG TCGTGTTCGT TCGAATCCTT CTTGGCTACC AAGTTCCCTA
ACGACAAGAG ATTTGGTTTA GAAGGTGCCG AAGCTGTTGT TCCAGGTATG AAAGCCTTGA
TCGATACTTC CGTCGAGTTC GGTGTAGAAG ACATCGTCAT CGGTATGCCT CACAGAGGTA
GATTAAACAT GTTGTCCAAC GTCGTAAGAA AGCCTAACGA ATCTATCTTC TCGGAATTCA
CCGGTTCCAA AGAATTCGAC GAAGGCTCTG GTGACGTGAA GTACCACTTG GGTATGAACT
ACGCCAGACC CACTACTTCT GGTAAGTTTG TCAACTTGTC CATTGTTGCC AACCCTTCGC
ATTTGGAGGC TGAAGATGGT GTTGTTTTGG GTAAGACCAG AGCCATTCAA CAATACAAGA
ACGATATCGG TGACTACAAG AGAGCCATGC CCATCTTGTT ACATGGTGAT GCTGCTTTCG
CTGGTCAAGG TGTAGTCTAT GAAACCATGG GTTTCGCCCA TTTGCCAGCC TACTCTACCG
GTGGTACTAT TCACATCATC GTGAACAACC AGATCGGTTT CACCACGGAT CCTAGATACT
CGAGATCGAC TTTGTACCCA TCCGATATCG CTAAAGCCTC CAACTCCCCT ATCTTCCACG
TCAATGCTGA TGATGTCGAA GCTTGTATCT TCGTCTTCAA CTTGGCTGCT GAGTGGAGAG
CTACTTTCCA TTCCGATGTT ATTATTGACG TTGTAGGCTA CCGTAAGCAT GGTCATAATG
AAACTGATCA ACCTGCATTT ACCCAACCGC TCATGTACAA GAAGATCGCT GAAAAGAAGT
CTGTTCTTGA ATACTACACC AACCAGTTGA TCCAGGAAGG CACCTTCACC ACTGAAGACA
TCAGCGAACA CAAGAAGTGG GTATGGAACT TATTGGAAGA CTACTTTGCT AAGTCCAAGG
AATACGTTCC AACTTCCAGA GAGTGGTTGA CCACTCCATG GGAAGACTTC AAGTCTCCTA
AGGAGTTGGC TACCGAAGTC TTGCCACACT TGCCTACTGC TGTAGATGAA GAGACCTTAA
AGAAGATCGG AAAGGCCATC TCGGAAGCTC CGGAAGGTTT TGAGATTCAC AGAAACTTGA
AGCGTATTTT GAATACCAGA AACAAGACCG TTGAAACTGG TGAAGGTATT GACTGGGCTA
CTGGTGAAGC TTTGGCTTTC GGTACTTTAG CCTTGGAAGG CTATCACGTC AGAGTATCTG
GTCAAGATGT GGAAAGAGGT ACCTTCTCGC AACGTCACGC TGTGTTGCAC GACCAGCAGT
CGGAAAAGAC CTACACCCCA TTGAATCACT TATCTGAAGA GCAAGGGGCT TTTGTTATCT
CCAACTCCTC CTTGTCTGAA TACGGTGTCT TGGGTTTCGA ATACGGTTAC TCGTTGACTT
CGCCAGATGC CTTAGTTCAA TGGGAAGCTC AATTCGGTGA CTTTGCTAAC ACCGGACAAG
TCATCATGGA TCAGTTCATT GCTAGTGCTG AGTCCAAGTG GAAGCAGCGT TCTGGTTTAG
TGTTGTCATT GCCTCATGGT TACGATGGTC AAGGTCCAGA ACACTCGTCC GGTAGAATCG
AGAGATACTT GCAGATGTGT AACGAAGACC AGCGTTATTT CCCATCTCCA TCCAAGTTGG
AACGTCAACA CCAGGATTGT AACTTCCAGG TCGCTTACCC TACTACCCCT GCCAACTTGT
TTCACTTGTT ACGTCGTCAA ATGCATAGAC AGTTCAGAAA GCCATTGGCT CTCTTTTTCT
CCAAGTCGTT ATTGCGTCAC CCATTAGCCA GATCCGACTT GTCTGAGTTC ACCAACGACT
CTCACTTCCA ATGGATCATT GAAGACGCCG AATATGGCAA GACCATTGCA CCAAAGGAAG
AGATAAAACG TGTCGTCCTC TGTTCAGGTC AAGTATTCAC TGCCTTGCAC AAGAAGCGTG
CTGCTATTGA AGACAAAACC ACTGCCTTTA TCAAGATTGA GCAGGTGCAT CCATTCCCAT
TCGCCCAGTT GCGTGATGCC TTGGACTCGC ACCCTAACCT CGAAGACTTG GTCTGGTGTC
AAGAAGAACC ATTGAACATG GGTTCGTACT CGTTCGTATC TCCACGTATA ACCACTACCT
TGGCTGAAAC CGAAAACCAT AAGGGTTTGA CCTTGCGTTA TGCCGGTCGT GACCCATCGG
CTTCTGTTGC TGCTGGTTCT AAGGCTATGC ACACTGCTCA AGAAGAGGCC TTCTTGAACG
AAACCTTCCA AGTTTAATTG AAATGCATGA AAATTACGCT ACTTGCTAGT TACTAATTGT
TTTGTTACGT TTGAAGCTTC CTATATGTTT TTTTAGAATG GTAGGAGACC TGCCGAGTAT
TTCATTTGAA CCTTTATGAT TTTACATATT CCTTTTATAT TTATTGATTT TACAAAATGT
TGATTTTTAG
|
|---|
| Protein sequence | MLKAFRNVVP RGQLLRASAR PSLRSMAPLT SSTSIRSTNS IRCFATGTDS FLQGNNSNYI
DEMYDAWRQD PSSVHASWNA YFKNIESSNI PPSQAFQAPP TIVPTVSGGA AGFVPGSNPI
SEDVVTHLKV QLLVRAYQVR GHQKAKIDPL GISFGDNSDT PKELTLDYYG FTDVDLNKQI
TLGPGILPRF AEAGKKSLTL REIIENCEKL YCQSYGVEYV HIPSKEQCDW LRERIEIPQP
FKYSADQKRQ ILDRLIWSCS FESFLATKFP NDKRFGLEGA EAVVPGMKAL IDTSVEFGVE
DIVIGMPHRG RLNMLSNVVR KPNESIFSEF TGSKEFDEGS GDVKYHLGMN YARPTTSGKF
VNLSIVANPS HLEAEDGVVL GKTRAIQQYK NDIGDYKRAM PILLHGDAAF AGQGVVYETM
GFAHLPAYST GGTIHIIVNN QIGFTTDPRY SRSTLYPSDI AKASNSPIFH VNADDVEACI
FVFNLAAEWR ATFHSDVIID VVGYRKHGHN ETDQPAFTQP LMYKKIAEKK SVLEYYTNQL
IQEGTFTTED ISEHKKWVWN LLEDYFAKSK EYVPTSREWL TTPWEDFKSP KELATEVLPH
LPTAVDEETL KKIGKAISEA PEGFEIHRNL KRILNTRNKT VETGEGIDWA TGEALAFGTL
ALEGYHVRVS GQDVERGTFS QRHAVLHDQQ SEKTYTPLNH LSEEQGAFVI SNSSLSEYGV
LGFEYGYSLT SPDALVQWEA QFGDFANTGQ VIMDQFIASA ESKWKQRSGL VLSLPHGYDG
QGPEHSSGRI ERYLQMCNED QRYFPSPSKL ERQHQDCNFQ VAYPTTPANL FHLLRRQMHR
QFRKPLALFF SKSLLRHPLA RSDLSEFTND SHFQWIIEDA EYGKTIAPKE EIKRVVLCSG
QVFTALHKKR AAIEDKTTAF IKIEQVHPFP FAQLRDALDS HPNLEDLVWC QEEPLNMGSY
SFVSPRITTT LAETENHKGL TLRYAGRDPS ASVAAGSKAM HTAQEEAFLN ETFQV
|
|---|
| |