| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_64420 |
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| Symbol | |
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| ID | 4841097 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009048 |
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| Strand | + |
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| Start bp | 248922 |
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| End bp | 251363 |
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| Gene Length | 2442 bp |
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| Protein Length | 813 aa |
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| Translation table | 12 |
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| GC content | 37% |
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| IMG OID | 640392412 |
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| Product | predicted protein |
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| Protein accession | XP_001386446 |
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| Protein GI | 150866749 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0116008 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATATATG AGAGATGTGA GAACCTGCTC CAACATAAGT TTCAATCGGT TGTAATTGTA
GGTTTGCGAG GAGTGGGAAA GTCAACTTTG GCCTTGATGG CTCTGGCTAC TTTGGGTCTT
GAATATGTAG ATCTTGAAAG ATGTCTAGTC GACTATACTG GAGTGTCTGA TGCAACTTTT
ATCAAAAGCG TTTCTAAGGA AGAATTTATA CATTTGCAGT ACAAGTTGAT TGTAAGATCA
TTTAGAGCTA ACAAGAATAA GAGAGCCATT TATGTATTGC CAGCAAGTTC GATCAACAAT
TCCGCCGTGA TGGAATATTT AAGAAATAAT TGCAATTGTC ACTGCGTTAT CAATATCGAA
TGTGACGAAG ATAGAATATT GAAGTATGTC AACTACACTG GTGAATATCA AAAGGGAATC
CTGTCAATAC AGTCCGGAAT ATCCCAATAT AGATCTGTTG CAAACTATAA TTTCTTCAAC
TTGGAATCAA ATTTAGATGT TTGGAAAAAG TATTCGTTCT CTAAGGTGGA TGATTCCAAG
CAAATTGAAG TTACACCACA TCTAATATTG AAACCCGTAG AATTGGAATT CATCAATTTT
ATGTCATTTA TTCTTTGGAA TCCAATACCG GAACCCTCTG ATGTTCTTTT GAAGCATTAT
CAGAGAAGCA ATTTAAGAAG CTTTTCTAAC TGTTTACAGC TCACATTCCC TTATGATGCC
AGAAACATTC ACGTGAACAA TTTTGGCGAC GTCTTGAATG GAGTAGATGC AATCGAAGTC
GGAGTTGATC TTATCCAGTT AATTAGAACA AAAATCATGC ATGTCAATTT GCGGCTAGAT
GAGTATATCG CGAGAATAAG AAGAAGTACT CGAGGATCCA TACCAATACT TGTTGGTATT
AAGAATACTA TCCCTGAGCT CAACAACTTC ATTATGGAGA GTACTGTTGA CTCTGTCATT
AGTACATCTC AAATTAAACA GGATTTTAGA AGCTTTTACT TCAGTATCTT GTACTCGATT
ATCAAAGTAG CTGCTGACTA TGTGGTTCTC AATTTGGAAA TTTTTCTTTT TGATGAAGTC
AATTTCCTAA ACGATATTAT CGTGAATGAT TCTTTCTATA TCATGGACCA ACTTAGACAT
ATGCAAGGTA ACAGTCTGTT TCTAGGAACA TATAACTCGA ACTGCGATGA ATTCTGGGCC
ATTCAAAAAA CAATAGGCAA AGTACGGTGC CTTGATATTA TCGATTTGAC GAATGATTTA
CAGATATCCA TGGTAAGAGT CACTTCTACT GCTCGTTGTG TATCAGATAA TTACAAGATA
CAAACATTCT TGGAATATTG CATGAAGAAA TATCCAGAAA CTACGGTATC AGCTTATAAT
CAAGGAACAA ATGGAAAAAT ATCCAAGATC TTAAACAAAG TGTTGACACC TGTATGTTCT
CCAAGTGCTG ATCCTCTGCA AGGTGAGCTC ACGTCATATG CTCTTAACCA GTCGAGGTTT
TCATGTTTTT TGCAGCCAAC GCTACGATTT TTTGCTGTGG GCAGAAGTGA TTCAAGTATT
CTCTATCAAT TTGTCTATAG ACTGGTGTTT GAGAAATTGG GACTTTCATA TTTTTTCAAA
ATTCTCGAAG ATGTATCAAT TGATGAATTA TTGAAGTCTC CCGATTTTGG AGGGGCGATA
TTAGCAACTC CTATAGAAAT TAAAGCGAAC GAATTTGCTG GTAAATCATC AGCACATGCC
GCAGAGATTG GATTAGTGGA TTCTATAATT GCAGAAAGAT CTCTTGATGA TCCATCTAAG
TTCCTACTTC GAGGGGAAAA TGCGGATTGC TTAGCAATCA AGGTCTATAT CTCTGACAAT
GTTGCTCCCA TAAATGCTGT AAGCCACAAT AAGAGTGTTC TCGTCATAGG TTCAGGTTTC
AAAAGTCGTG CTGCTATTTA TTCGTTGATG AAACTTGGCT ATAAGAACAT TTTATTGTAT
AGCCCTATGT CCATTGCTAG ACAGACTGAG AAGGATGTAT CTCTATCGCA CAATTTGGAT
TCTTCCAGGA AATTGGATTC CCACAATCTA TTGGCTAAGA TTACAATAAT TACTGAAGAA
CAATTCCAAA ATGGTATCCT CCCTGATGAT CTTCTATATC CAACAATAAT TATTAATTGC
ATGAGTGATG AGGATGTTCC TATCGATGGT CAGGTCAAGC TATCTGCAAA TTGGCTCAAG
AGTCCTTCTG GTGGAATATT CTTGGACACA CATATTGCAA ACAAAGAAAT TACAACCCTA
AATGAGAGCC TGGAATGGGA AAAAGGATGG ATCAAGACTA ATGGACTTGA ATTCTTGCTT
GCCAAAACAT TGATCCAGTT TGAGTTGTTT GTGGGTAAAC CAGCACCAAG AGAGCTTATA
AAATCCATTC TAATAGAGCA TTATCCTAAT GAAGTTCAAT AG
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| Protein sequence | MIYERCENSL QHKFQSVVIV GLRGVGKSTL ALMASATLGL EYVDLERCLV DYTGVSDATF
IKSVSKEEFI HLQYKLIVRS FRANKNKRAI YVLPASSINN SAVMEYLRNN CNCHCVINIE
CDEDRILKYV NYTGEYQKGI SSIQSGISQY RSVANYNFFN LESNLDVWKK YSFSKVDDSK
QIEVTPHLIL KPVELEFINF MSFILWNPIP EPSDVLLKHY QRSNLRSFSN CLQLTFPYDA
RNIHVNNFGD VLNGVDAIEV GVDLIQLIRT KIMHVNLRLD EYIARIRRST RGSIPILVGI
KNTIPELNNF IMESTVDSVI STSQIKQDFR SFYFSILYSI IKVAADYVVL NLEIFLFDEV
NFLNDIIVND SFYIMDQLRH MQGNSSFLGT YNSNCDEFWA IQKTIGKVRC LDIIDLTNDL
QISMVRVTST ARCVSDNYKI QTFLEYCMKK YPETTVSAYN QGTNGKISKI LNKVLTPVCS
PSADPSQGEL TSYALNQSRF SCFLQPTLRF FAVGRSDSSI LYQFVYRSVF EKLGLSYFFK
ILEDVSIDEL LKSPDFGGAI LATPIEIKAN EFAGKSSAHA AEIGLVDSII AERSLDDPSK
FLLRGENADC LAIKVYISDN VAPINAVSHN KSVLVIGSGF KSRAAIYSLM KLGYKNILLY
SPMSIARQTE KDVSLSHNLD SSRKLDSHNL LAKITIITEE QFQNGILPDD LLYPTIIINC
MSDEDVPIDG QVKLSANWLK SPSGGIFLDT HIANKEITTL NESSEWEKGW IKTNGLEFLL
AKTLIQFELF VGKPAPRELI KSILIEHYPN EVQ
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