| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_64379 |
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| Symbol | PMR1 |
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| ID | 4840850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009048 |
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| Strand | - |
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| Start bp | 846377 |
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| End bp | 849148 |
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| Gene Length | 2772 bp |
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| Protein Length | 923 aa |
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| Translation table | 12 |
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| GC content | 44% |
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| IMG OID | 640392165 |
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| Product | calcium/mangenease P-type ATPase |
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| Protein accession | XP_001386754 |
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| Protein GI | 150866972 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0474] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01517] plasma-membrane calcium-translocating P-type ATPase
[TIGR01522] golgi membrane calcium-translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00018171 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAA ACCCATTTCT GGTGTCCGCC GTGCTGGCTC CAGCCCGGTC CAGTTCTCCG
TCGATCAAGT TCTCGCAGAA GTCGTTTGAA GACACGGCAT CAGAGCTCCA AACTAACTTG
ATAACAGGTC TTTCCAACAG TCAAGACATC TTGAACAGAA GATCTCTACA TGGAATAAAC
GAGTTGTCCA GTGAAGAAGA GGAAAGCGTC TTTTTGAAGT TTTTGTCGAA GTTCTATGAA
GATCCGTTGA TTTTGCTCTT AATCGGCTCT GCCGTGATAA GTTTCTGGAT GGGTAACGTC
GACGACGCAG TTTCCATCAC GTTAGCCATC ACTATTGTAG TAACTGTAGG GTTCGTGCAA
GAGTACAGAT CTGAAAAGTC GCTTGAAGCA TTGAACAAGT TGGTTCCTGC TGAGGCTAAG
TTGACGAGAA ACGGGTCGAC ATCAACGGTA TTGGCTTCAA CGCTTGTTCC TGGTGATTTA
GTTCATTTTT CACAGGGTGA CAGAATCCCT GCTGATGTCA GACTTACTGA GGCTGTGTAT
TTGACCATTG ACGAATCCAA CTTGACAGGT GAAAACAGAC CTGTCAAGAA GACCACTGAC
TCTCTCACAC ATACAGGAAG TGACGTCCCT CCTGTAACAA ACAGAAGCTC CATTGCTTTC
ATGGGTACCT TGGTCCGTGA TGGCCATGGC TCTGGTATAG TTGTAGCAAC CGGTGCCAAA
ACCGAGTTTG GTGCTGTGTT TGAAATGATG TCGGAAATTG AAAAGCCCAA GACGCCCTTG
CAACAGGCAA TGGATAAGTT GGGTAAGGAT TTGTCAATTT TCAGTTTCAT TGTAATTGGT
GTAATCTGTT TGATAGGCAT TTTCCAGGGC CGCTCTTGGT TGGACATGTT CCAGATCTCC
GTGTCGTTGG CTGTTGCTGC TATTCCTGAA GGTTTACCCA TCATTGTCAC CGTGACATTG
GCATTGGGAG TGTTGAGAAT GGCTCGTCGT AAAGCCATTG TCAGAAGATT GCCCAGTGTA
GAGACCTTGG GCAGTGTAAA TGTTATTTGC TCCGACAAGA CAGGTACCTT AACTCAGAAT
CACATGTCCG TCACCAAGAT ATGGTCTACT GACTTCAAAG GCAGTTTCAA CAGTCCTTTC
CTTGTCGTTG ACAAGTTGGA CGATGAAAAG TTACATCACC AACTTACTAA GAATATTCGT
AAAGTGTTGG AAACGGGTAA TGTCTGTAAC AATGCCAGAT ATTCCCACGA GAACGAAAAG
TACGTAGGTA ACCCAAGTGA TATCGCTTTG GTAGAATGTT TGCCTCATTT TGGCTTGGAA
GACATCAGAG GCACCAGAGA AAGAGTATAC GAGTTGCCAT TCTCTTCCAA CAGAAAGTAC
ATGGCTATCT GTGTTCACTC TGGTGACATG GACAAGAACG AGACGTTTGC TAAGGGGGCC
GCGGAAAAGA TTGTTCAACT TAGTAACAGA TACTATGACG AAAATGGTGA TATTAAACCG
CTTACGGACG AGTTGAGAAA CAAGATTTTG GACAGATCCC ATGACTTGGC CAACGACGGA
TTGAGAGTTT TGGCATTTGC GAGAAGCAAC AAGAAATTCT TCAACGAGAA ACACGAACAC
AGCGAGCCCA AGGAGTTGGT ATTCTGTGGT TTAGTTGGAA TGAAGGATCC TCCTAGACCC
AACGTAGCGA AGTCCATTTC GCTCTTGATG AAGGGTGGGG TTCATGTGAT AATGATTACT
GGAGATTCAC CTACGACTGC TATTAACATT GCCAAACAGA TTGGTATGCC GATTGTGGGC
GACTCTTCTG TGATGACAGG AGACCAGTTG GAGTCGTTGA GTGAACAGGC ATTGGCAGAA
GCTATCCACA ATGTTTCTGT CTTCGCCAGA ACCACTCCAG AACACAAGGT CACAATTGTA
AAAGCCTTAC AAAGAAGAGG AGATGTAGTA GCTATGACTG GTGATGGTGT CAACGATGCC
CCAGCATTGA AATTGGCCGA CATTGGTATC GCAATGGGTA AACACGGTAC CGATGTAGCC
AAAGAAGCTG CTGATATGGT GTTGACAGAC GACGATTTCT CGATTATCTT GAATGCTATC
GAGGAAGGTA AAGGGATCTT CTACAACATT CAGAACTTCA TCACCTTCCA GTTGTCCACA
TCTATTGCTG CCTTGACATT AATTGCATTG GCTACATTTT TTGGCTTGCC CAACCCTTTG
AATGCTATGC AAATTCTTTG GATTAATATT TTGATGGATG GACCTCCTGC GCAATCTTTG
GGTGTAGAGC CAGTCGATCA CGAAGTCATG AATAAACCAC CAAGAAAGCG TAACGACAAG
ATTTTGACCC AGATGGTGAT CAGGAGAGTT TTACAATCTG CTGCGATGAT CATCTTGGGT
ACGTTGTACA TCTTCATCAA GGAAATGACC GATAACGAAG TCACTGCTAG AGATACGACT
ATGACGTTCA CGTGTTTTGT TATGTTTGAT ATGTTCAATG CATTGGCATG TCGTCACTAT
TCCAAGTCGA TCTTTGAGCT TGGCCTCAAC AACCCCATGT TCAATTTTGC TGTTGCCGGT
TCGTTGATTG GCCAGTTCTG TGCTGTATAT GTGCCATTTT TCCAGGCCAT TTTCCAGACT
GAGGCATTAT ATTTGAGCGA CTTGGTCCAC TTGTTGTTCT TGACCAGTAC TGTTTTCATT
GCTGACGAAA TCAGAAAGTA CTTGCTCAGA AAGAAGAACA ACTATATGAA TGGAGGAGGC
TTTGGAGTCT AA
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| Protein sequence | MSENPFSVSA VSAPARSSSP SIKFSQKSFE DTASELQTNL ITGLSNSQDI LNRRSLHGIN
ELSSEEEESV FLKFLSKFYE DPLILLLIGS AVISFWMGNV DDAVSITLAI TIVVTVGFVQ
EYRSEKSLEA LNKLVPAEAK LTRNGSTSTV LASTLVPGDL VHFSQGDRIP ADVRLTEAVY
LTIDESNLTG ENRPVKKTTD SLTHTGSDVP PVTNRSSIAF MGTLVRDGHG SGIVVATGAK
TEFGAVFEMM SEIEKPKTPL QQAMDKLGKD LSIFSFIVIG VICLIGIFQG RSWLDMFQIS
VSLAVAAIPE GLPIIVTVTL ALGVLRMARR KAIVRRLPSV ETLGSVNVIC SDKTGTLTQN
HMSVTKIWST DFKGSFNSPF LVVDKLDDEK LHHQLTKNIR KVLETGNVCN NARYSHENEK
YVGNPSDIAL VECLPHFGLE DIRGTRERVY ELPFSSNRKY MAICVHSGDM DKNETFAKGA
AEKIVQLSNR YYDENGDIKP LTDELRNKIL DRSHDLANDG LRVLAFARSN KKFFNEKHEH
SEPKELVFCG LVGMKDPPRP NVAKSISLLM KGGVHVIMIT GDSPTTAINI AKQIGMPIVG
DSSVMTGDQL ESLSEQALAE AIHNVSVFAR TTPEHKVTIV KALQRRGDVV AMTGDGVNDA
PALKLADIGI AMGKHGTDVA KEAADMVLTD DDFSIILNAI EEGKGIFYNI QNFITFQLST
SIAALTLIAL ATFFGLPNPL NAMQILWINI LMDGPPAQSL GVEPVDHEVM NKPPRKRNDK
ILTQMVIRRV LQSAAMIILG TLYIFIKEMT DNEVTARDTT MTFTCFVMFD MFNALACRHY
SKSIFELGLN NPMFNFAVAG SLIGQFCAVY VPFFQAIFQT EALYLSDLVH LLFLTSTVFI
ADEIRKYLLR KKNNYMNGGG FGV
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