Gene PICST_50547 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_50547 
SymbolGIT3 
ID4841068 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009048 
Strand
Start bp383504 
End bp385096 
Gene Length1593 bp 
Protein Length530 aa 
Translation table12 
GC content45% 
IMG OID640392383 
Productglycerophosphoinositol permease 
Protein accessionXP_001386465 
Protein GI126139886 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTTCTA GAGATTTGCC TCGCTCTGTC AGCGACCTTT TCCTTGGTTG GACCAGACAC 
TTGGGCAATG AAATCACTTT GAACAAGTCT AAACAGCAAT TGTTCGACGA TGACATGCAA
CCAGATGGAG CTGAAAAAGA AAAGGACGTC AAGGCAAGAA ACTTATGGCC AGCCTTCTGT
TCTGGTGCCG GTCTCTTTTC CGATGGTTAT GTTAACAATT CGATCGGTAC GGTGTCTTAT
GCCTTAAGCA GGCTCTACGA GGATGAGTAT GAAAATTCTA CTGCTATATC CAACGTTGGG
TCAATTGCCT TCGCTGGTAC GGTGGTTGGA CAATTGGGAT TTGGATACAT ATCTGACAGA
ATAGCCAGAA AAGGAGGAAT GATGATTGCC AACGTCATGT TGATCATTTT TGCTCTCTTG
TGTGCTGTTG CTACTTGGGG TAAAAATCCG CAAGGATTGT TTGCTGCCCT CACTGTATTC
CGTTTCTTCT TGGGTATAGC TATCGGAGCT GAGTATCCTA CGGCTTCTGT TATTGCCTCA
GAGTTCGCCA ACCAATTGCC AGCCGGAAAG AGAAACAGAT ACTTCGTGTG GTTCACCAAT
TCCATGATCG ACTTTGGATT TGTTGTTTCA GCATTCGTTC CTTTGGTACT CTTGTGGATC
TTCTCCGACA GACATTTAAG GGTCATCTGG AGATTGACCC TTGGTTTAGG TGCCATTCCT
CCTTTTGCCC TTTTCTTCAT GAGATTGAAA ATTGCCGACT CCGAGTCGTT TCAGAAGTTG
AATATGAAGA AGGTCAAGAA GTACCCTTAC TGGTTGATCA TCAAGTTCTA CTGGTTCAGA
TTGAGCGTTA TCTCGTTGAT CTGGTTCATC TACGATGTGT CGGCCTACTC ATTCAGTATC
TACTCCAATT TCATGATTGG CCGCATTACT GACGGCGATA TCTATAAGAC TTGGGGTTGG
AACGTTGTGT TCAACTTGTT CTACATGCCT GGTTCCTTCT TGGGTGCCAT TGCAGCCGAT
TATATTGGTC CTAGATTAAC GTTAGCACTT GGTGTAGGCT TGCAGGGTAT CATTGGTTTC
ATCATGGCTG CCTGTTACCC AAGCTTGAAA CATCATGTTG GTGCTTTCGT AGTAGTTTAC
GGTATCTTCT CCACTTTGGG TGAATTCGGT CCTGGTGATA ACATCGGTTT GTTAGCCTCC
AAGACTAGCG CCACTCCTAT CAGAGGTCAA TACTATGGTA TAGCTGCCGC AGTGGGCAAA
ATTGGTGCTT TTGTAGGTGT CTATATTTTC CCAGTTATCA TTAGGAATGC TGGTGGAAAA
GACACAGACA GTGGTAACCA GGCACCATTT TATGTTTCTT CAGCCTTGTG TATATTCTCT
GCTATCTTGG CACTTTTCTT CTGTCCCTCT GTCGGCCAGG ATGCCATTAA CAAGGAAGAT
GAAGACTTTG TCGCTTACCT TCGGAAGAAT GGTTACGATG TCGGCCAATT GGGTGCTGGA
GCCTTGGAGG AAACATCGTT TGAGGAGGTT GAATATGACG ACAAGACAAA GAAGTCATCC
GAAGTCGTCA GAGTCCAGGA AAAGAGCTAT TAG
 
Protein sequence
MASRDLPRSV SDLFLGWTRH LGNEITLNKS KQQLFDDDMQ PDGAEKEKDV KARNLWPAFC 
SGAGLFSDGY VNNSIGTVSY ALSRLYEDEY ENSTAISNVG SIAFAGTVVG QLGFGYISDR
IARKGGMMIA NVMLIIFALL CAVATWGKNP QGLFAALTVF RFFLGIAIGA EYPTASVIAS
EFANQLPAGK RNRYFVWFTN SMIDFGFVVS AFVPLVLLWI FSDRHLRVIW RLTLGLGAIP
PFALFFMRLK IADSESFQKL NMKKVKKYPY WLIIKFYWFR LSVISLIWFI YDVSAYSFSI
YSNFMIGRIT DGDIYKTWGW NVVFNLFYMP GSFLGAIAAD YIGPRLTLAL GVGLQGIIGF
IMAACYPSLK HHVGAFVVVY GIFSTLGEFG PGDNIGLLAS KTSATPIRGQ YYGIAAAVGK
IGAFVGVYIF PVIIRNAGGK DTDSGNQAPF YVSSALCIFS AILALFFCPS VGQDAINKED
EDFVAYLRKN GYDVGQLGAG ALEETSFEEV EYDDKTKKSS EVVRVQEKSY