| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_50442 |
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| Symbol | LYS12 |
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| ID | 4841073 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009048 |
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| Strand | + |
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| Start bp | 760392 |
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| End bp | 761525 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 12 |
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| GC content | 47% |
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| IMG OID | 640392388 |
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| Product | homo- isocitrate dehydrogenase |
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| Protein accession | XP_001386555 |
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| Protein GI | 126140066 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.185544 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0465536 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTGTCTT CCAGAACCGC CTTCCGTCGT ACTTTCACAA CCTCGGCCTC TCTTCTCAAG
AGCTTGAAAA TCGGGTTGAT TCCTGGTGAT GGGATTGGCC GGGAAGTTAT TCCAGCAGGT
AAAGCTATTC TCGAGAACCT TCCCAAGGAC CTCGACTTGC AGTTCGAGTT TGTCAACTTG
GATGCCGGTT TCGAATTATT CCAGAAGACT GGAACTGCCT TGCCAGACAA GACTGTGGAA
GTGTTGAAGA ACGAATGTGA CGGTGCTCTT TTTGGCGCTG TGTCTTCTCC AACCACTAAG
GTAGCAGGCT ACTCTTCTCC CATTGTCGCA TTGAGAAAGA AGTTAGGATT GTATGCTAAT
GTACGTCCTG TCAAATCTGT TGAAGGAATC GGCAGACCAG TCGATATGGT CATCGTCAGA
GAAAACACCG AAGATTTGTA CATCAAGGAA GAAAAGACCT ACAAAGCTGA AGATGGTACC
AAGGTTGCTG AGGCTATCAA GAGAATTACC GAGACTGCTA CCACCAGAAT CGCCAAGGTC
GCCTACGACA TTGCCTTGCA AAGACAGGCA ATTAGAGATG CATCTCCAAA CTTGAAGTCG
TTGCACTCCA AGCCTTCCGT CACAGTGACC CACAAGTCCA ATGTATTGTC GCAATCTGAT
GGTTTGTTCA GAGAAACTTG CAGAAACGTC TATGATGCCA ACCATGAAGA ATACGCAGGT
ATCGACTACA AGGAACAGAT TGTCGACTCC ATGGTCTACC GTATGTTCAG AGAACCGGAA
ATCTTCGATG TTGTCGTGGC TCCTAACTTG TATGGTGACA TCTTGAGTGA TGGAGCTGCT
GCTCTTGTTG GCTCACTTGG TGTTGTTCCA TCGGCTAACG TTGGTGACAG CTTCGCCATT
GGTGAACCAT GTCATGGTTC GGCTCCAGAC ATTGAAGGTA AGGGTATTTC AAACCCTGTC
GCTACCATCA GATCCACCGC CTTAATGTTG GAATTCATGG GCTACCCTAA GGCTGCCGCA
AAGATCTACG AAGCTGTCGA TGCTAACCTT TCTGAAGACA AGATCAAGAC TCCTGACTTG
GGTGGTTCTT CTACTACTCA AGAAGTCATC GACGACATCA TTAGACGTTT CTAA
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| Protein sequence | MLSSRTAFRR TFTTSASLLK SLKIGLIPGD GIGREVIPAG KAILENLPKD LDLQFEFVNL
DAGFELFQKT GTALPDKTVE VLKNECDGAL FGAVSSPTTK VAGYSSPIVA LRKKLGLYAN
VRPVKSVEGI GRPVDMVIVR ENTEDLYIKE EKTYKAEDGT KVAEAIKRIT ETATTRIAKV
AYDIALQRQA IRDASPNLKS LHSKPSVTVT HKSNVLSQSD GLFRETCRNV YDANHEEYAG
IDYKEQIVDS MVYRMFREPE IFDVVVAPNL YGDILSDGAA ALVGSLGVVP SANVGDSFAI
GEPCHGSAPD IEGKGISNPV ATIRSTALML EFMGYPKAAA KIYEAVDANL SEDKIKTPDL
GGSSTTQEVI DDIIRRF
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