| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_33820 |
|---|
| Symbol | QDR22 |
|---|
| ID | 4840912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009048 |
|---|
| Strand | + |
|---|
| Start bp | 558697 |
|---|
| End bp | 560127 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640392227 |
|---|
| Product | multidrug resistance transporter |
|---|
| Protein accession | XP_001386502 |
|---|
| Protein GI | 126139960 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0731367 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTTGA TCCTTATCTT GTCGTTGGTC GGCTTTTGGA GTACAGCATC TTCGCCCATA
TACTTTCCAG CCTTGCCTAC TCTAACTGCG TATTTCCATA CTACACCTTC AGTCATGAAC
TTGTCAGTTG TGGCTTACTT GGTTTTCCAA GGGATTGCAC CCACAGTTTC TTCAAACTTG
GCCGATAACT TTGGGAGAAG ACCGGTGATC TTGGCTTGCA TCTTGATCTT CATCGCTGCC
TGTATTGCCA TTTCTAGAAC AAATGTCTAT TGGCTCTTGG CAGTGTTGAG ATGTGTACAA
GCAGCAGGCA TAGGTCCAGT TATTGCCATC AGCTCAGGAG TAGCTGGTGA TGTGTGTACT
AGTGCCGATA GAGGAGGATT CGTCGGTATC GTAGCTGGAA TACAATTGCT TGGAAATGGT
ATGGGTGGAA TGGTAGGAGC AGCTCTTATA AACCAATTCA ACAGTTGGAG AGCCATCTTT
ATTTTCTTAG CTATTGGAGC AGGAGCTACT CTAATCTTTT CATTTTTCTT TCTTCCAGAA
ACGTCAAGAA GAATAGTAGG AAACGGTTCT ATTGTTCCCA AACACTTTAT CTCGAAGTCA
GCGCTCATCT ACTTACCCCA TTTCAAGAAA AGAATAAATA ATGATACGAC TACTCTTGAA
CCTCCTACGT CTTTCGACTT CCTTAGTCCC TTCAAGATCT TTTTCAAAAA GACGGTTTTT
CTTACTTTAC TTCCTGGAGG ATTACACTTC GCAGCATGGA CAGTAACTTT GACTTGCATT
TCTACTTACT TAGAACAGGA ACCTTACAAT TACACCGTCT TGCAAGTTGG TTTTGTATAC
CTACCACAAG GTTTATCCTG TCTTGTGGCT TCTATTTTAA TTGGACGAAC ATTGAACTGG
TACTATCGCT ACAGTTTGAA GAAATACAAC GACAAGTACC AGGATGCATT ATTGAAGCCT
CGATTCAACA TTTTCCGTGC CAGAATGACC GTGTGTATTG TTCCGGCCGT TCTCATGATT
ATAGGGCTTG TAATCTTTGG TTGGTGTCTA CATTATCATC AGCATATTGC CTCTATAATT
GTATCCTCCA TTCTTATTGC AATGTCGTCG TCGTCCTTTA TTGCTGCGAT GACAACAATG
CTTGTCGACA TGCATCCCAA CAATGGCAGT GCCTCAACAA GTTGTTTGAA TCTCATGCGT
TGCTTGCAAG CAGCATTATT TTCAGGTGTT CTCGAAAACA TGATAGCTTC CATGGGATTG
GGAGGCACTT TCACTCTTTT GGCTGGCCTT TGCATTGTGC TTGACCTTTG TTTGGTCTAC
GTTGTCATTT CTGTCTCCAA GAACCTCAGA GAAACTTCTG CGCTCACTAC ACCAGTTGAA
TCTGACAACG AAGTGGACGA GGTACCGGAG CAGAAGTCAC TTCAGCCATA G
|
|---|
| Protein sequence | MVLILILSLV GFWSTASSPI YFPALPTLTA YFHTTPSVMN LSVVAYLVFQ GIAPTVSSNL
ADNFGRRPVI LACILIFIAA CIAISRTNVY WLLAVLRCVQ AAGIGPVIAI SSGVAGDVCT
SADRGGFVGI VAGIQLLGNG MGGMVGAALI NQFNSWRAIF IFLAIGAGAT LIFSFFFLPE
TSRRIVGNGS IVPKHFISKS ALIYLPHFKK RINNDTTTLE PPTSFDFLSP FKIFFKKTVF
LTLLPGGLHF AAWTVTLTCI STYLEQEPYN YTVLQVGFVY LPQGLSCLVA SILIGRTLNW
YYRYSLKKYN DKYQDALLKP RFNIFRARMT VCIVPAVLMI IGLVIFGWCL HYHQHIASII
VSSILIAMSS SSFIAAMTTM LVDMHPNNGS ASTSCLNLMR CLQAALFSGV LENMIASMGL
GGTFTLLAGL CIVLDLCLVY VVISVSKNLR ETSALTTPVE SDNEVDEVPE QKSLQP
|
|---|
| |