| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_16856 |
|---|
| Symbol | XUT4 |
|---|
| ID | 4840896 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009048 |
|---|
| Strand | - |
|---|
| Start bp | 628073 |
|---|
| End bp | 629701 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640392211 |
|---|
| Product | high affinity xylose transporter (putative) (HGT3) |
|---|
| Protein accession | XP_001386715 |
|---|
| Protein GI | 126140386 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0752816 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.401981 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCGT TATTGACTAA CGAATACTTC AAAGACTACT ACCACAACCC GACTCCTGTT
GAAGTGGGTA CTATGATTGC TATCTTAGAG ATCGGCGCAC TTTTTTCCTC CTTCATAGCT
GGAAGAGTAG GTGACATCGT TGGCAGAAGA AGAACCATTA GATACGGGTC TTTCATTTTT
GTAGTAGGCG GTCTTGTACA AGCTACTTCG GTCAATATTG TCAATCTCTC ACTAGGAAGA
TTGATTGCCG GTATTGCCAT TGGCTTTTTG ACAACCATCA TCCCATGCTA CCAGTCTGAA
ATCAGCCCCC CAGACGATAG AGGTTTCTAT GCCTGTTTGG AGTTCACCGG AAATATCATT
GGATATGCTA GTAGTATTTG GGTAGACTAC GGGTTTTCAT TTTTAGACAA TGATTTCAGC
TGGAGGAGCC CATTGTATGT TCAGGTTGTT ATTGGCTCCA TGTTATTTAT TGGTTCATTC
CTTATTGTAG AAACCCCTAG ATGGCTCTTG GATCACAACC ATGATATCGA AGGCATGATT
GTCATTTCTG ACTTGTATGC AGATGGTGAT GTGGAAGACG ATGATGCTAT TGCTGAGTAC
AGAAACATAA AGGAAAGTGT CTTGATAGCC AGAGTTGAAG GCGGAGAGAG ATCGTACCAG
TATTTGTTCA CCAAATATAC CAAGAGACTT TCTGTGGCAT GCTTTTCGCA AATGTTTGCC
CAGATGAATG GTATAAACAT GGTATCTTAC TATGCTCCTA TGATCTTCGA ATCTGCTGGC
TGGGTTGGTA GACAAGCTAT CTTGATGACT GGTATCAACT CCATTATCTA CATCTTTAGT
ACCATTCCTC CATGGTACTT AGTTGATTCT TGGGGCAGAA AACCTTTGCT TTTATCTGGA
TCTGTGCTCA TGGGTGTTCC GCTCTTAACC ATTGCTTGTT CGTTATTCTT AAACAACACA
TACACACCCG GGGTTGTGGT TGGCAGTGTA ATCGTATTCA ATGCTGCTTT TGGATACAGT
TGGGGTCCAA TTCCTTGGCT CATGAGCGAA GTGTTCCCTA ACTCAGTTAG ATCAAAAGGT
GCTGCCATGT CTACTGCAAC CAACTGGCTC TTTAACTTTA TTGTTGGAGA GATGACACCT
ATTTTGTTGG ATACAATTAC CTGGAGAACT TACTTGATCC CGGCAACTTC GTGTGTATTA
TCGTTTTTTG CTGTTGGATT TTTATTTCCA GAGACCAAGG GTTTAGCATT GGAGGATATG
GGCTCCGTAT TCGATGATAA TTCGTCAATA TTTTCATATC ACTCAACTCC TTCCACTGGG
TATGGTGCGA CCGAGTCTAA CAGTAATGCC AGGAGAGCAA GTGTCATCTC TTCAGAAAAC
TACCAGGATA GTTTGCATCA GACAGCGGCT TCATTGGCTA GAAATCCTTC AAGCATGAGG
CCTGATTACG ATGGCATAAT CACAGGAGCT GCTACCCTTT CGCCAGTACC ACCATTAAAA
CCAATAAAGT CTGATGCGTC AGTCCATTCA GTCGATGCCA TAATTCCAAG CATTTCCAGC
AATATTCCGC AGGAAATTGA ACCACCAACC TTTGATGAAA TCTTTAAGTA CAAGTTGAAT
GAGATGGAA
|
|---|
| Protein sequence | MSSLLTNEYF KDYYHNPTPV EVGTMIAILE IGALFSSFIA GRVGDIVGRR RTIRYGSFIF
VVGGLVQATS VNIVNLSLGR LIAGIAIGFL TTIIPCYQSE ISPPDDRGFY ACLEFTGNII
GYASSIWVDY GFSFLDNDFS WRSPLYVQVV IGSMLFIGSF LIVETPRWLL DHNHDIEGMI
VISDLYADGD VEDDDAIAEY RNIKESVLIA RVEGGERSYQ YLFTKYTKRL SVACFSQMFA
QMNGINMVSY YAPMIFESAG WVGRQAILMT GINSIIYIFS TIPPWYLVDS WGRKPLLLSG
SVLMGVPLLT IACSLFLNNT YTPGVVVGSV IVFNAAFGYS WGPIPWLMSE VFPNSVRSKG
AAMSTATNWL FNFIVGEMTP ILLDTITWRT YLIPATSCVL SFFAVGFLFP ETKGLALEDM
GSVFDDNSSI FSYHSTPSTG YGATESNSNA RRASVISSEN YQDSLHQTAA SLARNPSSMR
PDYDGIITGA ATLSPVPPLK PINISSNIPQ EIEPPTFDEI FKYKLNEME
|
|---|
| |