Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_14301 |
Symbol | |
ID | 4841034 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009048 |
Strand | + |
Start bp | 74562 |
End bp | 79319 |
Gene Length | 4758 bp |
Protein Length | 1518 aa |
Translation table | 12 |
GC content | 38% |
IMG OID | 640392349 |
Product | predicted protein |
Protein accession | XP_001386413 |
Protein GI | 150866725 |
COG category | [R] General function prediction only |
COG ID | [COG5219] Uncharacterized conserved protein, contains RING Zn-finger |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TCTGGTGATA TAGGATACAA TGGGTTTCCT GTTCACTTGA ACTACTTCAG TTCTCTTCCA GACCCTTCCA TTATTGTAGA TCCGACATTG GGGATTACCT TCAAGTCGTT GTTGAAGAAG GACCCCATTA CTAAGCAGAA ATCGTTGAAC GACTTGATAT CATTAAGTAA GACAGAAAAG TCGAGTTCCT TCCAGGATGA TCTCACCATA ATAACGTGGA TCCAATTGTA TCCAAAATTG GCAATCGAGA ACTCGAGAGC AATTAGACTC GCATCTCATC AGGTTCAAGC CATCTTTCTC CAATTAGTAG GAGGTAAAAA CTTCAGTAAG TACCTCAAAA GCTCGCTTCC AGTATGGTTG CTGGGTATCT TTGATAGCGA GAAAGCCGTA GCTACTGCTA CGTACAAGTC TTTGTTAGAT AGTTTCCAGA ATGATAGGGA TAAAGTTGAT GAAAAGATCT GGATCATCTT CTACGAACAA ATAATAAACT ACATCAAGAC CACAATCCTG ATAGAAACTC CGAAGAGTTT GTCAGATTCC AGATTCACAA AGGAAGAAGA CTCGGTTGTT AAGTATCAGA GAGTTCTCCA AAACAGTTTA CAGATGTTGA TCCGAGTCAT CAAGCTTATC AATTCTGGAG GTATTCCAAT CCAGTCTGTT GATTTCGATA TCATAGCCGA GATTATCCTG CTGGAAAAGC TTTGGAACTA CCTTGGAGAA GCACTCGATG AGTCTACAAT GAACTATCTG TTGTTCGGAA CCTTACTCGA GTTGCTTAAG ACAATATTTG TTGGCAATTC TGATGGAGAG TTGTCCGTAT TTGCTAAGAA TTTGACAGAT ATAAAAAGTA TCTATAAGAC TGTCTCCAAG AAGTTCATCA AACTTGTCAA GTTGAAGAAT AATAAGAGTA CCCCTACTGG AAACATTGTG TATTCTTCAT TCATCTTGCA GTTTTGGGAT ACTTTGAGAG CGCTAACTCT TTTTAGTGGC TTGAAGAACA TCAAAAGTGT GAAAGTGAAA AAGAACTTTT GGGAGCTCGG GGGGAGCAAA AGTTTTGCTC GTCTTGTAGA ATACCTCAAA CTTGGAAGTT GTCAACTGAA TCCAGCCTAC TATACTATTA TAAGTCATTT CATTTCGTCC CTAGCAAGTT CTGAGATAAA CATTAACGAA GACTTCCAGT TCGTAGAATT TCATGATTTT GGGAGTGCCA CTCTTTTGAT TGGAAAAATC TTGAATAAGC AGTATAAATC ATTGAGCTCG TTTGACTATA AGGAGAAGGC AATCCAGTGT ATTCTTAGTG TCTATGATAT TTTTTCTGAG AGGCTAGATG ATCAGCTATT GCCTTTATTG AAACAGATAT TATATATGAC AATCGATTCG GTTTCTGTGG ATGTTCTCAG AAGAGACGCG ATATCAAAGA AGAAAAGTAT TGAAGTTGCC ATTAGTCAGT CCGTTGGTCA GAAGGTTGCA AACGAGAACA TGCTGAACTT TTTTGGTGAT TTCGATAACG CACTTTCACA CCTAGTACAG AATAATGAAA GTAAATTGAG TGTTGATGGC TTTGAGTTTA GTTCTAATGT CTCTAAAATT GTCCAGTCCT ATTTTGACAT TTTATTGCTC GGAAACCATT TCGACATCGC TTCAGCAGTT GTCGGGAATA CTGTTGATAT ATTGGTCGAG GATACCACTA TTGAAAAACC AGTCATTGCA TTTAATATAA TATCAACTTA TCTTGGCAGC TTTAGGGACG TCACTGAAAA AACTCAATTG GTACCTCTTT TAGAGATTCT TCCAAGTTTT TTTGAGCAGG ACTTTGTGAA AGAGCCTCTT GAATTGCTCA AGTCTTTCGT AACCTCCAAC CTCCAACAGA GTTTAATAGA AGAAGCCGTA AATGGAAGCT ACCTTAAATT GACAATGGTA GCTCCTGAGC AGAATGTGCT CTTGTTAAGA ACTCTTTCGC AGTTCATCGA TTTCGAAACC AAAAAGGATA CCTACCCAGA GATCTATGAA TACTTGGTGG AGTTGTCTCG GAAGAAGACG TTGACCCCAG AAGAATCTAG TTTGATCTAC AGTCAATTGA ATGTATCTGA AGTCTTCGAA AACTTAGTTA ATGTCTCTTC TGAAGATAAG GGAAGAAGTC ATGATTTTGT AAAAGCCATT GCGAATCTAG CTTCTATCAA TACTCTCACT AAGCATTTCG AAAGTGAAAG TTTAAAAACT ATTGCAAGAC ATGCATGGGA AAACATTCAT GACCCTGATA TGGCCAAGTT CTTTGATTGG ATCAAAATTG ATAGATCTTT CTTTGAACTT TCCTTATATA ACTATGTTGA AAGCTGTGGA TTTCAAACAG ATTTTTCTAA TATTGCCAAA TATCTAGACA ATGATTTCGT ATCATTTGAT TTATTGGAGA CTAGAGTTAA TAACGCTATG TCCCAAATTC CTAATCACTT GATTTCGATT TCGAATCCTT TGGAGAACAA TGTATATTTG AGGGATTCAA AAATGGATTT AGTATTGGAT AGAGGAATTA TTACATTCGG GAAATTCATT AATACTATCT TGAAGTCTAC AAAAGGAGAA GATGAACGTC TTTATGTGTT GGGTTCGTTG ATCAGTGAAT ATATCAACGA TCTTCTTGTT CTTGAAAGGG TAACAGAGAG AGTGCATTCC GACGAGTACC TTCAAATTCG TGAAAGTTTA ATGTCTTGCT TGTTGAATAT CTTTAAGGAA AGTAATACTG ATATTACCAG GCTTGTTTCA GACAATCAAA TTGAAGGAAG TTCGTTGGAT GCTAAGGTAT TGAATCACCT TAACCTGGGT ATGAATGGCT CCGGTCTGAA TTGGGCATAT TCCGCTAGAG TCTTCAAGCG CATTCTTGAC ATGAAGTTTG AGAGTATGTC ACTTAATACT TTTGAAGAGC TCACAATCGA CTATAGAGTA TTACTCAAGA CCCCTATTAA ATTTGCAGCT TTCCAACTCA GCACTACGAA GTTTTTCTCT AGTGCCAAGT TTGATAGGAT CCGAAACTTT GTAGTTGCCG AGATATTGGG AGTTAGAAAA GAGTCTGAAA TCTTGACGGA GGGTTTAAAG TGGATATCAT TGAGTGTAAA CTTTTTCAAT GTTGAAGAAC GTTCAGATGT TGTTCCACCT CACAGATTAG CAATGATTTG CAATCAGATT TTCAACTGGT TGGAATCGGG AGTTGCTTAT GATGAGGAGT TTGTTTCCAT GAGAGTTCTT TTGACAAAAT TCTTCAGCGG ATTAATTGTC AAACAGTCTG ATTTACCGGA CAAGGCATGG GAAGTTATTT CTCGATTGCT CAGTGATAAT TTGTCTACTT GTGAAAATGA ACCATCCAGA ATCGACTTAA AATATTTTTC GTTGAAGTTA TTAGATGTTG TTAGAAAGAA CGGAAAGGAA AGGTATCCTG AGGAATGGAA AGAAGTTGCA AACTCCACCA GAGAAGAAAT TTTGGATCTC TTTACCAATG CTGATATCAT ATCCGCAGAT ATACAATACA ACAACCAAGT AATCGTTCAA TGCAATGAAT TATTCGTTAG AGTTGTTCTT GATTACGATA TTCCTGTTAA GATGTTGAAA GCGCATGAGA ATGAGTTGTA CAACATCTTG TCAGGAGAAT TTTCTATTCC TTTAAAGCGT GTTGCTGTTT TCTTCCTACG TAAGATCATT CTTGCAGATC AGCAGGATTT TGTTTTGGAG TACCAATTGA AAAAGTCGAA ATTGGAGCAG ACTGAAGTCG AAGATGAGTT GGAAGTTAAT TTACCGTCTG CACTCATTAA TATCATTCAA AAGTCATTGG AATATGATGT AGACGATGAT GGGCTAGTAG CCACTTTTAA TTGGGGCTGG TACTTGGTCT TCGCTTACTT GGAAGACATC ACTTATTCCC TTCGTACTGA GTACATCAAA CTATTGAAAG ACAATGGATC ATTAGATCAT CTTTTAATTC ATATATTTGA GAGAGCAGAT GTCACCGATA ACAAGTTCTT GAAGAAATTG TCTCCTGATG AAATTGAAAA GTCTACCAAA GTGCATAACA GTTTCATCTC GGACTACGAT ATCAGATCTG GAATTCCTGG TGAGAGCTTT GCGTTTGAGA TGCAATTTCT CTTGCTTCAT CATTATTTCT TATCGTTGAA GTACATTAGC TCTCCTGTCC AGACCTGGTA CAAGGAGATT CGTGACAAGC AATTGAAACA GAGAGTTGAG AAGTTTACCA CAAAATTTGT GTCTCCATTG CTCGTAGCAC AGATCTTGAA TGATGTGGGA GAGGCAAAAG ATAAACTAGA AAGTAGAGAC GAGAACTTGA CTGTCAAGGT AAACAAGATC ACAAACGAGA TAAGATCAGT GTATGTAATA GATGAACAAA CTATGGAAAT GGTGGTCAAG ATACCGCACA ACTATCCACT TGAAAGTGTT ACAGTGGAAG GTCCATTACG TCTTGGAGTC AAGGAAATTC AATGGAAGGC GTGGCTTTTG GCGTCTCAAA GAGTCATTTC TCTTACCAAT GGCTCTATCG TTGATGCTAT TGAGTTGTTC AATAAGAATG TTAATCTCCA CTTTTCAGGA TTCGAAGAGT GTGCCATTTG TTACTCCATC TTACATCAAG ACCTTTCACT TCCATCTAAA AGCTGTTCCA CTTGTAATAA CAAGTTCCAT GCTGCTTGTT TGTACAAATG GTTCAAGAGT TCAGGTAGCA GCACATGTCC ACTCTGTCGT TCTACGTTTA CTTTCAGA
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Protein sequence | SGDIGYNGFP VHLNYFSSLP DPSIIVDPTL GITFKSLLKK DPITKQKSLN DLISLSKTEK SSSFQDDLTI ITWIQLYPKL AIENSRAIRL ASHQVQAIFL QLVGGKNFSK YLKSSLPVWL SGIFDSEKAV ATATYKSLLD SFQNDRDKVD EKIWIIFYEQ IINYIKTTIS IETPKSLSDS RFTKEEDSVV KYQRVLQNSL QMLIRSVDFD IIAEIISSEK LWNYLGEALD ESTMNYSLFG TLLELLKTIF NLTDIKSIYK TVSKKFIKLV KLKNNKSTPT GNIVYSSFIL QFWDTLRALT LFSGLKNIKS VKVKKNFWEL GGSKSFARLV EYLKLGSCQS NPAYYTIISH FISSLASSEI NINEDFQFVE FHDFGSATLL IGKILNKQYK SLSSFDYKEK AIQCILSVYD IFSERLDDQL LPLLKQILYM TIDSVSVDVL RRDAISKKKS IENMSNFFGD FDNALSHLVQ NNESKLSVDG FEFSSNVSKI VQSYFDILLL GNHFDIASAV VGNTVDILVE DTTIEKPVIA FNIISTYLGS FRDVTEKTQL VPLLEILPSF FEQDFVKEPL ELLKSFVTSN LQQSLIEEAV NGSYLKLTMV APEQNVLLLR TLSQFIDFET KKDTYPEIYE YLVELSRKKT LTPEESSLIY SQLNVSEVFE NLVNVSSEDK GRSHDFVKAI ANLASINTLT KHFESESLKT IARHAWENIH DPDMAKFFDW IKIDRSFFEL SLYNYVESCG FQTDFSNIAK YLDNDFVSFD LLETRVNNAM SQIPNHLISI SNPLENNVYL RDSKMDLVLD RGIITFGKFI NTILKSTKGE DERLYVLGSL ISEYINDLLV LERVTERVHS DEYLQIRESL MSCLLNIFKE RSSLDAKVLN HLNSGMNGSG SNWAYSARVF KRILDMKFES MSLNTFEELT IDYRVLLKTP IKFAAFQLST TKFFSSAKFD RIRNFVVAEI LGVRKESEIL TEGLKWISLS VNFFNVEERS DVVPPHRLAM ICNQIFNWLE SGVAYDEEFV SMRVLLTKFF SGLIVKQSDL PDKAWEVISR LLSDNLSTCE NEPSRIDLKY FSLKLLDVVR KNGKEREEIL DLFTNADIIS ADIQYNNQVI VQCNELFVRV VLDYDIPVKM LKAHENELYN ILSGEFSIPL KRVAVFFLRK IILADQQDFV LEYQLKKSKL EQTEVEDELE VNLPSALINI IQKSLEYDVD DDGLVATFNW GWYLVFAYLE DITYSLRTEY IKLLKDNGSL DHLLIHIFER ADVTDNKFLK KLSPDEIEKS TKVHNSFISD YDIRSGIPGE SFAFEMQFLL LHHYFLSLKY ISSPVQTWYK EIRDKQLKQR VEKFTTKFVS PLLVAQILND VGEAKDKLES RDENLTVKVN KITNEIRSVY VIDEQTMEMV VKIPHNYPLE SVTVEGPLRL GVKEIQWKAW LLASQRVISL TNGSIVDAIE LFNKNVNLHF SGFEECAICY SILHQDLSLP SKSCSTCNNK FHAACLYKWF KSSGSSTCPL CRSTFTFR
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