Gene PICST_91009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_91009 
Symbol 
ID4840496 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009047 
Strand
Start bp948749 
End bp949339 
Gene Length591 bp 
Protein Length144 aa 
Translation table12 
GC content43% 
IMG OID640391811 
Productpredicted protein 
Protein accessionXP_001386371 
Protein GI126139697 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1358] Ribosomal protein HS6-type (S12/L30/L7a) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.37094 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTCCATACCT GTCGAAGAAG TCTATTATAC TAAAATGTCT GACGTTGAAC AAGAACAAAT 
TGTCGAAGAA GTTGCCGTTG AACAAACCGA AGCCGGCTCC ATCTCCATCG AAGATGCCTT
GAAGGTCGTC TTGAGAACCT CTTTGGTCCA CGACGGTTTG GCCAGAGGTT TGAGAGAAGC
TTCCAAGGCT CTTTCTAGAA GAGAAGCTCA ATTGTGTGTT CTCTGTGACT CTGTCACCGA
AGAATCCATC ATCAAGTTGG TTGAAGCTTT GTGTAACGAG CCAGAAGAAA AGATCCCATT
GATCAAGGTC TCTGACGCCA AGTTGTTGGG TGAATGGGCT GGTCTCTGTC AATTGGACAG
AGAAGGTAAC GCCAGAAAGG TCGTTGGTGC CTCTTGTGTT GTCGTCAAGA ACTGGGGTGC
TGACTCTGAT GAAAGAAACA TCTTGTTGGA ACACTTCTCT CAACAATAAA TGAGCGGTTT
AGCAGTTGGT TCTGCTGAAT TGCTGCCCTG AACATCTTGT CTTTGACGGG TGTTCTGAAA
AGGTAGTGAT ATTTTGTATA GTATTAATAT TAATATAAAA TCCTATTTTT C
 
Protein sequence
MSDVEQEQIV EEVAVEQTEA GSISIEDALK VVLRTSLVHD GLARGLREAS KALSRREAQL 
CVLCDSVTEE SIIKLVEALC NEPEEKIPLI KVSDAKLLGE WAGLCQLDRE GNARKVVGAS
CVVVKNWGAD SDERNILLEH FSQQ