| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_90975 |
|---|
| Symbol | PYC1 |
|---|
| ID | 4840453 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009047 |
|---|
| Strand | - |
|---|
| Start bp | 73655 |
|---|
| End bp | 77477 |
|---|
| Gene Length | 3823 bp |
|---|
| Protein Length | 1179 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640391768 |
|---|
| Product | Pyruvate carboxylase |
|---|
| Protein accession | XP_001386229 |
|---|
| Protein GI | 126139413 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1038] Pyruvate carboxylase |
|---|
| TIGRFAM ID | [TIGR01235] pyruvate carboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.301663 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.518395 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATTGCGCTGA ACCTATATAT ACTCGAATTG ACTCGCTGAT TTTTTCCCTG GAACAACTTC
AGTTTTTCAG TCTAATTTCT TTCTTTTCTT CTTCATCTTT CCCTGTCTTC TCTTGTCTTA
CTCAATTACC ATGTCGTCCC TTTCTCCTCA CGACCACCAT GGCAAGATCA ACCAGATGAG
AAGAGACTCC ACTGTGTTGG GCCCAATGAA CAAGATCTTG GTGGCTAACC GTGGAGAAAT
CCCCATCAGA ATCTTCAGAA CTGCTCACGA ATTGTCAATG CAGACCGTAG CCATCTACTC
ACATGAAGAT CGTTTGTCGA TGCACCGTCT TAAAGCTGAT GAATCTTATG TTATCGGTAA
GAAGGGAGAA TTCTCTCCCG TTGGTGCCTA CTTGCAAATC GACGAAATTA TCAAGATTGC
AAAGACCCAC AACGTCAACA TGATTCACCC TGGGTACGGG TTTCTTTCGG AAAACTCTGA
GTTTGCCAGA AAGGTCGAGG AAGCTGGTAT TGCCTGGATT GGACCTACAC ACGAAACCAT
CGATGCTGTT GGTGACAAGG TTTCTGCTAG AAACTTAGCT TTGGCCAACG ATGTCCCAGT
TGTCCCAGGT ACCCCAGGGC CAATTGACTC TGTAGAAGAA GCTGAAGCCT TTGTGGAGAA
GTACGGCTAT CCTGTTATCA TCAAAGCTGC CTTTGGTGGT GGTGGTAGAG GTATGAGAGT
CGTCAGAGAA GGCGATGACA TCGGCGATGC CTTCAAGAGA GCCACTTCCG AAGCCAAGAC
TGCTTTTGGT AATGGTACGT GTTTCATTGA GAGATTCTTA GACAAACCCA AACATATCGA
AGTGCAATTG TTGGCTGACG GATACGGCAA CGTCATCCAT CTCTTTGAAA GAGACTGTTC
CGTGCAAAGA AGACACCAGA AGGTGGTCGA AATTGCCCCA GCCAAGAACT TGCCCAAGGC
TGTTAGAGAC GCTATCTTGA CCGACGCCGT CAAATTGGCC AAGTCGGCCA ACTACAGAAA
CGCTGGTACG GCCGAGTTCC TTGTAGATGA ACAAAACAGA CACTATTTCA TTGAAATCAA
CCCTAGAATC CAGGTTGAAC ATACAATCAC TGAAGAAATC ACTGGAGTTG ATATCGTAGC
TGCCCAAATC CAGATTGCTG CAGGTGCCTC GTTGCAACAG TTGGGTCTCT TGCAAGACAA
GATCACCACG CGTGGTTTTG CTATCCAGTG TAGAATCACT ACCGAAGACC CATCCAAGAA
CTTCCAGCCA GACACCGGTA AGATCGAAGT GTACAGATCT TCTGGTGGTA ACGGTGTGAG
ATTGGACGGT GGTAACGGGT TTGCTGGTTC CATTATCAGT CCTCATTACG ACTCGATGTT
GGTGAAGTGT TCTACTTCTG GTTCCACCTA CGAGATCGCC AGAAGAAAGA TGTTGCGTGC
ATTGATTGAA TTCAGAATCA GAGGTGTCAA AACCAACATT CCATTTTTGT TGGCTCTTTT
GACCAACGAG ACGTTTATTA GCGGTAGCTG TTGGACGACT TTTATTGATG ATACTCCTTC
CCTTTTCCAG ATGATCTCCT CTCAAAACAG AGCCAACAAG ATCTTGAGCT ATTTGGCTGA
CTTGATTGTC AATGGTTCTT CCATCAAAGG TCAAGTTGGT CTTCCAAAGT TGAACGAAGA
AGCTGAGATC CCTACGATCC ACGATCCAAA AACCGGAATT CCTATTGACG TCGAACTCAA
CCCCGCACCA AGAGGCTGGA GACAGGTTCT TTTGGAAGAG GGACCAGATG CCTTTGCTAA
GAAGGTTCGT AATTTCAATG GTACCTTGAT CACCGACACT ACTTGGAGAG ATGCCCACCA
GTCATTGTTG GCTACCAGAC TCAGAACCAT CGATTTGTTG AACATTGCAC CTACTACAGC
CCATGCGCTT AACGGTGCAT TCTCGTTGGA ATGCTGGGGT GGTGCTACTT TCGACGTGTG
CATGAGATTC CTCTACGAAG ACCCTTGGGC AAGATTGAGA AAGTTGCGTA AATTGGTTCC
TAACATCCCC TTCCAGATGT TGTTAAGAGG AGCCAACGGT GTTGCTTACT CTTCTTTGCC
AGACAACGCT ATTGACCAAT TCGTCAAACA GGCAAAGGAC AACGGTGTCG ACATCTTCAG
AGTTTTTGAT GCCTTGAACG ACTTGGACCA GTTGAAGGTT GGTATTGATG CGGTGAAGAA
GGCTGGCGGT GTAGTTGAAG CCACTGTCTG TTACTCCGGT GACATGTTGC AGAAAGGCAA
GAAGTACAAT TTGGCCTACT ATGTCGATGT CGTTGACAAG ATTGTTGCTA TGGGTACGCA
CTTCTTGGGT ATCAAGGATA TGGCCGGTAC TTTGAAGCCT AAGGCTGCTA CTGATTTAGT
CAGTGCGATC AGAGCCAAGT ACCCTGACTT ACCTATTCAT GTTCATACTC ACGACTCTGC
TGGAACTGGT GTCGCCTCTA TGACTGCTGC TGCTAAGGCT GGTGCTGATG TGGTTGATGC
TGCTTCCAAC TCGATGTCTG GTATGACTTC TCAGCCTTCT ATCAGTGCCA TCTTGGCTTC
GTTTGAAGGT GAGGTTGAGA CCGGATTGTC TGAGCGTTTG GTCAGAGAAA TTGACCACTA
TTGGGCCCAG ATGAGATTGC TCTACTCGTG TTTCGAAGCC GACTTGAAGG GACCTGACCC
CGAAGTGTAC GAGCACGAAA TCCCTGGTGG TCAATTGACC AACTTGTTGT TCCAGGCCCA
ACAATTGGGT CTTGGTGCTA AGTGGTTGCA GACAAAGGAG ACATACAAGA TTGCCAACAG
GGTATTGGGA GACGTTGTCA AGGTCACTCC TACCTCCAAG GTCGTTGGGG ACTTAGCTCA
ATTCATGGTT TCAAACAACT TGACTGAAGA AGACGTCAAC AAGTTGGCTG GTGAGTTGGA
TTTCCCTGAC TCAGTGCTTG ACTTCATGGA AGGTTTGATG GGTACTCCAT ACGGAGGATT
CCCAGAACCT TTGAGAACCA ATATGTTAGG CAACAAGAGA CAGAAATTGA ACGAAAGACC
GGGTCTTTCG TTGGCTCCAG TTGACTTCTC TGCGCTCAAG CAGGAGTTAG TTTCTAAGTA
CGGCAATTCC ATTAAGGAAG TCGACTTGGC CTCTTACACT ATGTACCCTA AGGTCTACGA
GTCATACCGT AAGATCGTTG AAAAGTACGG TGACTTATCT GTTTTGCCAA CACGTTACTT
CCTCAAGGGT ATCAATGTTG GTGAAGAGTT GAGTGTCGAA ATAGAACAAG GTAAGACTTT
GATCGTGAAA TTGTTGGCTG TTGGTGAGAT CAGTCAACAG AAGGGTACCA GAGAAGTGTT
CTTTGAATTG AACGGTGAAA TGCGTTCTGT CACTGTAGAC GACAAGACTG TTTCTGTCGA
GACCATCACC AGACGTAAGG CTACTCAGCC AAACGAAGTT GGTGCCCCAA TGGCTGGTGT
CGTCATTGAA ATCAGAACCC AGTCTGGAAC GGATGTCAAA AAGGGAGACC CTATCGCAGT
GTTGTCCGCC ATGAAGATGG AAATGGTGAT TTCTGCCCCT GTTTCTGGTG TTGTCGGAGA
AATCTTGATC AAAGAAGGTG AATCTGTTGA TGCCAGCGAC TTAATCACCA GCATTCTCAA
ACACAACTAG ATTTGTGGAT CGTTAAGGAC ATTATGAAAA GAGAAAAGTA TCTTCGTCCA
CTTATTACGT TTAGTTCTAC ATCTTTGTTT ATTATTAGTA TATTATCTGT TACTTATTTT
TGTTATATTT CCATATAGCT TTATTATGAA TTAATGGTAG TTC
|
|---|
| Protein sequence | MSSLSPHDHH GKINQMRRDS TVLGPMNKIL VANRGEIPIR IFRTAHELSM QTVAIYSHED
RLSMHRLKAD ESYVIGKKGE FSPVGAYLQI DEIIKIAKTH NVNMIHPGYG FLSENSEFAR
KVEEAGIAWI GPTHETIDAV GDKVSARNLA LANDVPVVPG TPGPIDSVEE AEAFVEKYGY
PVIIKAAFGG GGRGMRVVRE GDDIGDAFKR ATSEAKTAFG NGTCFIERFL DKPKHIEVQL
LADGYGNVIH LFERDCSVQR RHQKVVEIAP AKNLPKAVRD AILTDAVKLA KSANYRNAGT
AEFLVDEQNR HYFIEINPRI QVEHTITEEI TGVDIVAAQI QIAAGASLQQ LGLLQDKITT
RGFAIQCRIT TEDPSKNFQP DTGKIEVYRS SGGNGVRLDG GNGFAGSIIS PHYDSMLVKC
STSGSTYEIA RRKMLRALIE FRIRGVKTNI PFLLALLTNE TFISGSCWTT FIDDTPSLFQ
MISSQNRANK ILSYLADLIV NGSSIKGQVG LPKLNEEAEI PTIHDPKTGI PIDVELNPAP
RGWRQVLLEE GPDAFAKKVR NFNGTLITDT TWRDAHQSLL ATRLRTIDLL NIAPTTAHAL
NGAFSLECWG GATFDVCMRF LYEDPWARLR KLRKLVPNIP FQMLLRGANG VAYSSLPDNA
IDQFVKQAKD NGVDIFRVFD ALNDLDQLKV GIDAVKKAGG VVEATVCYSG DMLQKGKKYN
LAYYVDVVDK IVAMGTHFLG IKDMAGTLKP KAATDLVSAI RAKYPDLPIH VHTHDSAGTG
VASMTAAAKA GADVVDAASN SMSGMTSQPS ISAILASFEG EVETGLSERL VREIDHYWAQ
MRLLYSCFEA DLKGPDPEVY EHEIPGGQLT NLLFQAQQLG LGAKWLQTKE TYKIANRVLG
DVVKVTPTSK VVGDLAQFMV SNNLTEEDVN KLAGELDFPD SVLDFMEGLM GTPYGGFPEP
LRTNMLGNKR QKLNERPGLS LAPVDFSALK QELVSKYGNS IKEVDLASYT MYPKVYESYR
KIVEKYGDLS VLPTRYFLKG INVGEELSVE IEQGKTLIVK LLAVGEISQQ KGTREVFFEL
NGEMRSVTVD DKTVSVETIT RRKATQPNEV GAPMAGVVIE IRTQSGTDVK KGDPIAVLSA
MKMEMVISAP VSGVVGEILI KEGESVDASD LITSILKHN
|
|---|
| |