Gene PICST_85423 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_85423 
Symbol 
ID4840446 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009047 
Strand
Start bp617767 
End bp618767 
Gene Length1001 bp 
Protein Length302 aa 
Translation table12 
GC content44% 
IMG OID640391761 
Producthypothetical uncharacterized conserved protein 
Protein accessionXP_001386313 
Protein GI150866647 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0676] Uncharacterized enzymes related to aldose 1-epimerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0569839 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TCACGAAGAC ACCTAGCCAC CATGCCTGTA GAAGACAACG ACTCCCAAGT TGTGCTCACC 
CACCCAGAAG ATAATTCCAC CACCGTCACT ATTCTTAAGT ATGGTGCCAA CGTACTCTCG
TGGAAGAACA AAGGAAAAGA ACAACTCTGG CTCAGTGAAG GTGCCAAGGT TGATGGTTCT
AAACCCGTCA GAGGAGGTAT CCCATTAGTC TTCCCGGTAT TTGGCAAACA GAAAGATGCA
AACCATCCCA CTTTCCCTCT TCCTCAGCAC GGATTCGCCA GATCTTCGGA ATGGGAATTC
TTGGGCCAGA CTTCTGCGAA TCCTCCTACA GTGCAATTTG CCTTAAGCCC AGAACAGGTG
CTGTCTGAAG CACTCAAGTT GTGGGGAAAC GGCGACTACG ACTTCACGCT TATCCTTACT
GTCTCCTTGG AGTTGGACAA ACTCACCACT GAGATCGAAG TGGAAAACGC GGGTGAAAAA
GAGTTTGAGT TCAACTGGCT CTTCCACACT TACTTCAGAG TTCCAGATAT CACAGACACC
TTGGTCAACA ACTTGATCGA CCAGAAATGC TTTGACCAGC TTTTGGCCGA GGAATACGTG
GAAAAGTCGC CTATCATCAG TTTCCACGAG GAATTCGACA GAATTTATAA GAAAGTTGAT
TATGGCAAAA CTTTCCAGAT CATCGAGTTT GGTAAAGTTT TGATCAATGT AGTCCGTAAG
AATTTACCTG ATGCTGTAGT CTGGAACCCT TGGATCAAGA AATCAGATGG AATGGCTGAC
TTCTTGCCTA AAAACGGTTA CTTGAACATG CTCTGTGTAG AACCAGGTAA CGTTTCAGAT
TTTGTCAAGT TGCAAAAGGG TGAAAAGTGG ACTGGTGCCC AGATCTTGAC AGTGGGGGGT
GAGATCAAAG TCCAGTCAAA TATCTACTAA GACAAAGAGA TTATAGACTT ATTCAGAAGA
ATACTAATTG ACTATTGAGT ATAGATAAAG CAATAGTAGC T
 
Protein sequence
MPVEDNDSQV VLTHPEDNST TVTILKYGAN VLSWKNKGKE QLWLSEGAKV DGSKPVRGGI 
PLVFPVFGKQ KDANHPTFPL PQHGFARSSE WEFLGQTSAN PPTVQFALSP EQVSSEALKL
WGNGDYDFTL ILTVSLELDK LTTEIEVENA GEKEFEFNWL FHTYFRVPDI TDTLVNNLID
QKCFDQLLAE EYVEKSPIIS FHEEFDRIYK KVDYGKTFQI IEFGKVLINV VRKNLPDAVV
WNPWIKKSDG MADFLPKNGY LNMLCVEPGN VSDFVKLQKG EKWTGAQILT VGGEIKVQSN
IY