Gene PICST_85298 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_85298 
Symbol 
ID4840536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009047 
Strand
Start bp839899 
End bp841244 
Gene Length1346 bp 
Protein Length300 aa 
Translation table12 
GC content45% 
IMG OID640391851 
Productpredicted protein 
Protein accessionXP_001386171 
Protein GI150866532 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.239178 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
AACAATTGTC TGTTTACCTC TAGCCAGCAT CCAAAGCGAT CCCTCCGGAC CCTCATAGAC 
TCCAGCACCG CTCCGCTTAA TCCCGGCACT CTGCGGCATT CTCCTTTCCA TTTCCTACTT
TTTCCAGCCT CAGGCCAATC TTGAGCTTTT TTTCCATCCG TTCAGCTTTT CAGCTCTCAG
CTTTCTCCTC TTTCCCAGCT TTCCATTCAA CTTTTCCTTA TAGACAAAAT GACGGTGTCT
GAGCAAGATA TCCTCGCATC GTATCCGCAA GTCAATGCGC CTTCCGAAAT CACCGGATAC
ACTTCCAACT TGACCGAAGA ACAGAAACAA CAACTCGAAC AGTTTCGTAA GGAATTGACC
GAATTGGGCT TTGTTGACCG TTTGGACGAT GCGTCCTTGT TACGATTCTT GAGAGCCCGT
AAGTTTGATG TCGCCAAAGC CAAGCTCATG TTCGTCAACT GCGAGAAATG GAGAAAAGAC
TTCGGTACCA ACACCATCTT GGAAGACTTC CACTACACGG AAAAGCCGCT TGTGGCCTCC
ATGTATCCAC AGTACTACCA CAAGACAGAC AAGGACGGCA GACCAGTGTA TTATGAAGAA
TTGGGCAAAG TCAACTTGCC AGAAATGTTG AAGATCACTA CCCAAGAAAG AATGTTGAAG
AACTTGGCTT GGGAATACGA GTCCATGACT CATTACAGAT TGCCTGCTTG TTCCAGAAAG
GCCGGAGTCT TGATCGAAAC TTCTTGTACT ATTATGGACT TGAAAGGGAT CTCGTTGTCC
ACTGCCTACC AGGTTTTGGG TTACGTCAGA GAAGCCTCTG TTATTGGACA GGACTACTAC
CCAGAAAGAA TGGGTAAATT TTATCTCATC AATGCCCCAT TTGGCTTTTC TACTGTTTTC
AAGTTGTTCA AGCCATTTTT GGACCCAGTC ACCGTGTCCA AGATCTTCAT CCTTGGATCA
TCATACCTGA AGGAATTGTT GAAGCAGATT CCTCCAGAAA ACTTGCCAAA GAAATTTGGT
GGAAACTCCA CCGCAGTCGA ACAAGAGTTA TACTTGAACG ATGAAGGTCC ATGGAGAGAT
ACACAATACA TCGGACCAGA AGGCGAAGCT CCTAGATCGT TTCCTCTCTA AGTGCTCCTA
ATCTCATTGC TCCCGTACAA ACGTATTTGC TCAAAGGATA ATTCCACAGC CTTCTTTAGC
ACGCTCGGTT CATATTATTG TTTTTGCTCC ATTGCTTCAG CTGCTATTCA TCACATCTTT
GTACCACAGC TTACCGCTTT TTTTGTAGTT TTGGGTTAGT GCAGCTTCTG CGTTTTTATA
CATTTAATAT ATAAGGTTAT CTTTAG
 
Protein sequence
MTVSEQDILA SYPQVNAPSE ITGYTSNLTE EQKQQLEQFR KELTELGFVD RLDDASLLRF 
LRARKFDVAK AKLMFVNCEK WRKDFGTNTI LEDFHYTEKP LVASMYPQYY HKTDKDGRPV
YYEELGKVNL PEMLKITTQE RMLKNLAWEY ESMTHYRLPA CSRKAGVLIE TSCTIMDLKG
ISLSTAYQVL GYVREASVIG QDYYPERMGK FYLINAPFGF STVFKLFKPF LDPVTVSKIF
ILGSSYSKEL LKQIPPENLP KKFGGNSTAV EQELYLNDEG PWRDTQYIGP EGEAPRSFPL