Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_85287 |
Symbol | |
ID | 4840486 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009047 |
Strand | - |
Start bp | 518699 |
End bp | 523579 |
Gene Length | 4881 bp |
Protein Length | 1239 aa |
Translation table | 12 |
GC content | 42% |
IMG OID | 640391801 |
Product | predicted protein |
Protein accession | XP_001386296 |
Protein GI | 150866632 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4581] Superfamily II RNA helicase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.793183 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGTCG ATTCTGGGGC TGAAGACGAT GCACTTAGAT CAATTCTAGA CCCGCACACT CGAACTAATT TCCGGGAGGA TTTTGGGGAG GATTTTGCAG CTCAGGATCA GGAGTTGTTG AATCTGTACG TCGCTCCTTC TGACCATGTC ACTTGGGAAA TTCAAAGACT GGTGCAGACG GTTCCTCAAG TCGACAAACA GAAAGTACAC AGGCTACTTC TAAAATCACC GGAAAGAATG AGGCGAACGT CGTATCGGTT AAAGCGAAAT ATCTTGTTTG GACAAGTTAC GGGATATAAG GAAGAACTTA GACAAGCAGA TATAGACAAC GCTAAAGCTG AAAACTCGAT GTCGGTGAAT AGAAAGTATA CCACGAAGTT GGAGGCGCTC AGAGGTCGTA GTTCGTATTT GCCATTTAAT CCCGGTGGGA TCATTGGTGA TTTGAAGGAA GTAAAACCTA TAGTCAAGAC GAAGCGCCTG CACCGAGACC AGTACGGTCT CTTAGATCGT CCACCAGATT TATCTCGAGG GTTGAAGTTG GATGAAAGTC AACAAAATCA ACAAATAGAG TCTCTTGCCG AGTCGATTGA TAGCTTGAAA ATGTTGAACG AAGTTAATGA CTTAGATGAC GAAGGAACCA AGGTTATCAG CGAGTATCAG TTTACTACTC AGAAGCAATC ATCTCAAGAA CAGCCCTCAT CACAAGTATT TCCAGTACCT TTTGTAGCAG CTGAGATTGA AGGCATTGTA GTTCCCGACT TTGTAGCAAT TAATGCTGCT TCAAAAGCTA AGAGGAAACA AAAGTCCTGG GCTCATGTAG TTGATTTGGA CCACACCATT GACAACTTCC ACGAACTTAT ACCTAATATG GCCCGAACGT GGCCGTTTGA ATTGGACACT TTCCAGAAGG AAGCCGTGTA CCACTTAGAA AAAGGCGACT CCGTATTTGT AGCAGCACAT ACCTCTGCTG GTAAGACGGT TGTAGCTGAG TATGCCATAG CTATGGCCAG CCGTAATTTG ACGAGGACCA TATATACATC GCCTATCAAG GCACTTTCCA ATCAGAAGTT CCGAGACTTT AAGGAAACGT TTAAAGATAC AGACGTAGGC TTGATTACTG GAGATGTACA GATCAACCCG GGAGCCAACT GTTTGATCAT GACAACAGAA GTCTTACGGT CGATGTTGTA CCGAGGTGCC GATATCATTC GAGACGTGGA GTTTGTTATT TTCGATGAGG TCCATTACGT CAACGATATC GATCGTGGTG TGGTATGGGA AGAAGTCATC ATCATGTTGC CAGACCACAT CAAGTATATC CTATTGTCTG CTACGGTTCC CAATACGTTT GAATTTGCCA ATTGGGTTGG GCGAACCAAA GAGAAGGATA TATATGTCAT TTCAACGCCA AAGAGACCTG TTCCCTTGGA GATCTTCATT TCGGCCAAAG ACAATATGTT CAAAGTTGTG GATTCTCACA GAGTATTTAG TGAAGATGAG TTCAAGAAAC ATAAAGAGCA CCTTGAAAAC AGCAAGAAAA AGCCGGGACT ACCTAAAGCT TCTATGGGAT CTGGTACACG TGGAGGTCCA GGTGGGTCTG CCAGAGGTGG AAATCGAGGA GGAAGAGGTG GATCTGGAGC TGCAAGAGGT GGAGCAAGAG GTGGACAATC AGCTAATAGA GGCAGAGGTA ACCTTGTCAC GCGAGCAGGG GGCAGGTTCT TTGCCCAGGA TGGCCCCAAT AAGGGTACCT GGCTCAATCT TGTACAATAT CTCAAGAAGT CCAATTTGTT GCCTTGCGTG GCTTTCGTAT TCTCCAAGAA GAAATGCGAA GAATACGCTG ATAGTTTGAC TAGCGTTGAC TTATGTACAG CCAGAGAGAA ATCGGAAATC CACATGTTCA TAGACAAGTC TCTATTTCGT TTGAAAAAGG AAGATCGGGA GTTACCGCAG ATTCTTAAGA TCAGAGAAAT GTTGAGCCGA GGAATTGCTG TCCATCACGG AGGATTACTT CCTATAGTCA AGGAATGCAT TGAAATTCTT TTTGCGAAGA CTTTGGTCAA GGTTTTGTTT GCAACAGAGA CATTTGCCAT GGGTTTGAAC TTGCCTACTA GAACAGTTGT ATTTAGTTCG CTCCGTAAGA ACGATGGTAG AAGCTTCAGA AACTTATTGC CAGGAGAATT CACTCAAATG TCAGGTAGAG CAGGTAGAAG AGGGATAGAT GCCACCGGTA CAGTTATAGT CATGGCCTAC AACGATCCAC TCTCACCTGT AGACTTCAAG GAGATTACAT TGGGTACACC AACGAAGTTG CAATCGCAGT TCAGATTGAC ATATAATATG ATCTTGAATC TACTCAGAAT AGAGGCCTTG CCAGTTGAGG AAATGATTAA ACATTCGTTT AGCGAAAACT CAACCCAGGT TCTCCTCCCT GAAAACCAGA AAAAAGTAGA TAAGTTGTTA CTCCAACTGC ATTCGTTGAA GTTGACCCCG TGCGAAGAGT GTGACCTCGA AGGAATCCAA GAAACCTACG ACTTGATGAA GTCATATGAA GTGTTGTATG GCCAATTAAC TGCACTCATC CATGAAGTGA GTGCGTCTAA ACTTCAGATC TTGAAGTCTG GTAGACTAGT TTTCTTCAGA GACAACAACA AAGTTGTGAG AATGGGAGCG ATCGTCAAAT CAGACAATTC TACCGACTCC GTCTCAATTA TCACGTTTGA TCACGGGAAG CCATTTGAAG AAGATAGTGC CATGTTCAAG CTTCCTTTTG TTCCAATTTA TGAGTATAGA TTGATGAACT TTAAGAAGAT TATTTTCAAC GGCAACTTGC GAGTCGAATC GGTGCCATAT GAGAGCATCT GTTTTATTTG TGGGTATGCC ATAATGGCGA ACATCTTCCA GGTGTTGCAG AACGAAGAAA AAGCAGTCAG CGAGTTCAAA GAGCAGATCA ATTCTATTCT TGAATTCCAA AATGAAATAG AAGAGGTTTC GTTCGGATTG ATGAACAAAC TTTCGTTGTA TGAAAGTTTA GCAGGGAAGA GAAATATTTA TGAGCAGTTG TGTAAGACTA CATCATGGGA ATGTTCCAAT TTCAAGAGCC ATTATGTGGA GATTCACGAA AAGAACAAAT TGGAGGTTGA GATTGCATCT TTGCAAAGTA TGATCTCGGA CGAGAACTTG GAATTGCTTC CTGACTACGC CCAACGTTTG CAGGTTTTGG AAACAATGGG TTTCATAGAT GAACAGCAAA ATGTGGTATT GAAGGGCAGA GTCGCCTGTG AAATCAACTC TGGTTGGGAA CTTGTAGTCA CAGAATTGGT TTTGGATAAC TTCCTTGGAG ATTTCGAACC AGAAGAGATT GTTGCATTGC TTTCGTGTTT CGTCTATGAA GGTCGTACTA ATGAAGAGGA GCCACCATTG ATAAACGGAC GATTAGAAAG AGGCAAAACA AGAATTTTGG AACTAACCGA GAAGTTGTTA GATGTGTACG GAGAACATCA AGTGTCTTTG ACTTCTGAAG AAGAAGAATT CTTGGATAGA AAGAGATTTG CCTTGACCAA TGTGGTGTTT GAGTGGGCAA GAGGTCTTTC ATTCAACGAG GTCATGCAAA TCAGCCCAGA AGCAGAAGGT ACCATTGTTA GAGTCATCAC CAGATTGGAT GAAGTCTGTC GTGAAGTCAG GAATGCTGCT TTAATAGTTG GTGATTCAAC ATTGTCCCAA AAGATGAGCG TCGCCCAAGA GAAGATAAAG AGAGATATTG TCTTCTGTGC GTCGTTGTAC TTGTAGATAT TCTACATTAA ATTGTAATAT ATAATATTAC CTCAGCCTTA TACTTTCAAA GCGAGAGTCA TCTTTATAAC TATTTTTATA CATCAATACT GTAAATTAGC TATATACATG GAAAAGTACA AATGCAATGA TAATCGTGCT ACAGCCGAGT CAACGCTTCT GATGTTAAGT TTATGATCCC CAATCCCCCA TGGATTACCT TCTTGAGAAG GAACAGTTCC CGTACCTTTT GTCTGTCGAA CTTGATGGTA AGTAGCCCAA TCATGGTGTA TAAGCTACCG ATGCTAGTTC TGTCTAAGAT GCCGGCTTTG ACTTGTGCAT ACGTTGTTTC GTCAGCAATA CGACCGAACT TCATCGCCCC ACGATAAGGC AATATGCAAT TATAGAGCAA GTTTCTCTTC ATGAACTCTG GAATTACTCC TTGTTCGTTA TTGAAAAAAT CCAAACTATC GAAGATATCC TTGGTAGACG AAGAAAGGTA GCGCTCATTC ATAAAAACTG TCTCCACGTC CAACAACATC TTTAATGCGT GCTTTCCTAT TGCCCTGATT CTGTCTGTCT CTATTAGAAC TCTATCAGTG GGGAACGTGA TTCTCCGTTC ATCTACAGCT TGTAGTCGTA TATCCAAATG AAATGTCGAA AGTCCGCACA AAATACCAAT TTTCTCCTCC AACAGAAGTG GAAACTGAGT CCCTACAAAT CTCTGAATTA TATCCGTCCT TGGAGATATT CTGGCTTCAA AGTCTTGCTC ATTGTGCAAA TGGCTCAAGA CTGTATTGTT GCCCAACCCA CATCTGTGGA AGAAATCAGA CTCAAAATCG ATTGCTGAGC GATCGTAGAA TGAAGGCTTA ATTCCATCGT ATGTGATTCG TTTGGCTGAG TTCATCTTTG AGTTGAGAAG ATACAAATCT TCACTCAGAA TCATATCTGC TGAGTGCAGA CGTCTCCTCG AAGTACTGTA GAATCGCAGT TGAGGTAGTT TAGCAATAGG AGGAGACACC TTCTCGAGCG CTCGAAATAG ATAGCGCCTG TAAAGCATGA TGTGAAATAG TCCAGCAAGG AAACCAACAA GTTCCAGCCC TGTTCTGTCT T
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Protein sequence | MSVDSGAEDD ALRSILDPHT RTNFREDFGE DFAAQDQELL NSYVAPSDHV TWEIQRSVQT VPQVDKQKVH RLLLKSPERM RRTSYRLKRN ILFGQVTGYK EELRQADIDN AKAENSMSVN RKYTTKLEAL RGRSSYLPFN PGGIIGDLKE VKPIVKTKRS HRDQYGLLDR PPDLSRGLKL DESQQNQQIE SLAESIDSLK MLNEVNDLDD EGTKQSSQEQ PSSQVFPVPF VAAEIEGIVV PDFVAINAAS KAKRKQKSWA HVVDLDHTID NFHELIPNMA RTWPFELDTF QKEAVYHLEK GDSVFVAAHT SAGKTVVAEY AIAMASRNLT RTIYTSPIKA LSNQKFRDFK ETFKDTDVGL ITGDVQINPG ANCLIMTTEV LRSMLYRGAD IIRDVEFVIF DEVHYVNDID RGVVWEEVII MLPDHIKYIL LSATVPNTFE FANWVGRTKE KDIYVISTPK RPVPLEIFIS AKDNMFKVVD SHRVFSEDEF KKHKEHLENS KKKPGLPKAS MGSGTRGGPG GSARGGNRGG RGGQSANRGR GNLVTRAGGR FFAQDGPNKG TWLNLVQYLK KSNLLPCVAF VFSKKKCEEY ADSLTSVDLC TAREKSEIHM FIDKSLFRLK KEDRELPQIL KIREMLSRGI AVHHGGLLPI VKECIEILFA KTLVKVLFAT ETFAMGLNLP TRTVVFSSLR KNDGRSFRNL LPGEFTQMSG RAGRRGIDAT GTVIVMAYND PLSPVDFKEI TLGTPTKLQS QFRLTYNMIL NLLRIEALPV EEMIKHSFSE NSTQVLLPEN QKKVDKLLLQ SHSLKLTPCE ECDLEGIQET YDLMKSYEVL YGQLTALIHE VSASKLQILK SGRLVFFRDN NKVVRMGAIV KSDNSTDSVS IITFDHGKPF EEDSAMFKLP FVPIYEYRLM NFKKIIFNGN LRVESVPYES ICFICGYAIM ANIFQVLQNE EKAVSEFKEQ INSILEFQNE IEEVSFGLMN KLSLYESLAG KRNIYEQLCK TTSWECSNFK SHYVEIHEKN KLEVEIASLQ SMISDENLEL LPDYAQRLQV LETMGFIDEQ QNVVLKGRVA CEINSGWELV VTELVLDNFL GDFEPEEIVA LLSCFVYEGR TNEEEPPLIN GRLERGKTRI LELTEKLLDV YGEHQVSLTS EEEEFLDRKR FALTNVVFEW ARGLSFNEVM QISPEAEGTI VRVITRLDEV CREVRNAALI VGDSTLSQKM SVAQEKIKRD IVFCASLYL
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