Gene PICST_85287 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_85287 
Symbol 
ID4840486 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009047 
Strand
Start bp518699 
End bp523579 
Gene Length4881 bp 
Protein Length1239 aa 
Translation table12 
GC content42% 
IMG OID640391801 
Productpredicted protein 
Protein accessionXP_001386296 
Protein GI150866632 
COG category[L] Replication, recombination and repair 
COG ID[COG4581] Superfamily II RNA helicase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.793183 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGTCG ATTCTGGGGC TGAAGACGAT GCACTTAGAT CAATTCTAGA CCCGCACACT 
CGAACTAATT TCCGGGAGGA TTTTGGGGAG GATTTTGCAG CTCAGGATCA GGAGTTGTTG
AATCTGTACG TCGCTCCTTC TGACCATGTC ACTTGGGAAA TTCAAAGACT GGTGCAGACG
GTTCCTCAAG TCGACAAACA GAAAGTACAC AGGCTACTTC TAAAATCACC GGAAAGAATG
AGGCGAACGT CGTATCGGTT AAAGCGAAAT ATCTTGTTTG GACAAGTTAC GGGATATAAG
GAAGAACTTA GACAAGCAGA TATAGACAAC GCTAAAGCTG AAAACTCGAT GTCGGTGAAT
AGAAAGTATA CCACGAAGTT GGAGGCGCTC AGAGGTCGTA GTTCGTATTT GCCATTTAAT
CCCGGTGGGA TCATTGGTGA TTTGAAGGAA GTAAAACCTA TAGTCAAGAC GAAGCGCCTG
CACCGAGACC AGTACGGTCT CTTAGATCGT CCACCAGATT TATCTCGAGG GTTGAAGTTG
GATGAAAGTC AACAAAATCA ACAAATAGAG TCTCTTGCCG AGTCGATTGA TAGCTTGAAA
ATGTTGAACG AAGTTAATGA CTTAGATGAC GAAGGAACCA AGGTTATCAG CGAGTATCAG
TTTACTACTC AGAAGCAATC ATCTCAAGAA CAGCCCTCAT CACAAGTATT TCCAGTACCT
TTTGTAGCAG CTGAGATTGA AGGCATTGTA GTTCCCGACT TTGTAGCAAT TAATGCTGCT
TCAAAAGCTA AGAGGAAACA AAAGTCCTGG GCTCATGTAG TTGATTTGGA CCACACCATT
GACAACTTCC ACGAACTTAT ACCTAATATG GCCCGAACGT GGCCGTTTGA ATTGGACACT
TTCCAGAAGG AAGCCGTGTA CCACTTAGAA AAAGGCGACT CCGTATTTGT AGCAGCACAT
ACCTCTGCTG GTAAGACGGT TGTAGCTGAG TATGCCATAG CTATGGCCAG CCGTAATTTG
ACGAGGACCA TATATACATC GCCTATCAAG GCACTTTCCA ATCAGAAGTT CCGAGACTTT
AAGGAAACGT TTAAAGATAC AGACGTAGGC TTGATTACTG GAGATGTACA GATCAACCCG
GGAGCCAACT GTTTGATCAT GACAACAGAA GTCTTACGGT CGATGTTGTA CCGAGGTGCC
GATATCATTC GAGACGTGGA GTTTGTTATT TTCGATGAGG TCCATTACGT CAACGATATC
GATCGTGGTG TGGTATGGGA AGAAGTCATC ATCATGTTGC CAGACCACAT CAAGTATATC
CTATTGTCTG CTACGGTTCC CAATACGTTT GAATTTGCCA ATTGGGTTGG GCGAACCAAA
GAGAAGGATA TATATGTCAT TTCAACGCCA AAGAGACCTG TTCCCTTGGA GATCTTCATT
TCGGCCAAAG ACAATATGTT CAAAGTTGTG GATTCTCACA GAGTATTTAG TGAAGATGAG
TTCAAGAAAC ATAAAGAGCA CCTTGAAAAC AGCAAGAAAA AGCCGGGACT ACCTAAAGCT
TCTATGGGAT CTGGTACACG TGGAGGTCCA GGTGGGTCTG CCAGAGGTGG AAATCGAGGA
GGAAGAGGTG GATCTGGAGC TGCAAGAGGT GGAGCAAGAG GTGGACAATC AGCTAATAGA
GGCAGAGGTA ACCTTGTCAC GCGAGCAGGG GGCAGGTTCT TTGCCCAGGA TGGCCCCAAT
AAGGGTACCT GGCTCAATCT TGTACAATAT CTCAAGAAGT CCAATTTGTT GCCTTGCGTG
GCTTTCGTAT TCTCCAAGAA GAAATGCGAA GAATACGCTG ATAGTTTGAC TAGCGTTGAC
TTATGTACAG CCAGAGAGAA ATCGGAAATC CACATGTTCA TAGACAAGTC TCTATTTCGT
TTGAAAAAGG AAGATCGGGA GTTACCGCAG ATTCTTAAGA TCAGAGAAAT GTTGAGCCGA
GGAATTGCTG TCCATCACGG AGGATTACTT CCTATAGTCA AGGAATGCAT TGAAATTCTT
TTTGCGAAGA CTTTGGTCAA GGTTTTGTTT GCAACAGAGA CATTTGCCAT GGGTTTGAAC
TTGCCTACTA GAACAGTTGT ATTTAGTTCG CTCCGTAAGA ACGATGGTAG AAGCTTCAGA
AACTTATTGC CAGGAGAATT CACTCAAATG TCAGGTAGAG CAGGTAGAAG AGGGATAGAT
GCCACCGGTA CAGTTATAGT CATGGCCTAC AACGATCCAC TCTCACCTGT AGACTTCAAG
GAGATTACAT TGGGTACACC AACGAAGTTG CAATCGCAGT TCAGATTGAC ATATAATATG
ATCTTGAATC TACTCAGAAT AGAGGCCTTG CCAGTTGAGG AAATGATTAA ACATTCGTTT
AGCGAAAACT CAACCCAGGT TCTCCTCCCT GAAAACCAGA AAAAAGTAGA TAAGTTGTTA
CTCCAACTGC ATTCGTTGAA GTTGACCCCG TGCGAAGAGT GTGACCTCGA AGGAATCCAA
GAAACCTACG ACTTGATGAA GTCATATGAA GTGTTGTATG GCCAATTAAC TGCACTCATC
CATGAAGTGA GTGCGTCTAA ACTTCAGATC TTGAAGTCTG GTAGACTAGT TTTCTTCAGA
GACAACAACA AAGTTGTGAG AATGGGAGCG ATCGTCAAAT CAGACAATTC TACCGACTCC
GTCTCAATTA TCACGTTTGA TCACGGGAAG CCATTTGAAG AAGATAGTGC CATGTTCAAG
CTTCCTTTTG TTCCAATTTA TGAGTATAGA TTGATGAACT TTAAGAAGAT TATTTTCAAC
GGCAACTTGC GAGTCGAATC GGTGCCATAT GAGAGCATCT GTTTTATTTG TGGGTATGCC
ATAATGGCGA ACATCTTCCA GGTGTTGCAG AACGAAGAAA AAGCAGTCAG CGAGTTCAAA
GAGCAGATCA ATTCTATTCT TGAATTCCAA AATGAAATAG AAGAGGTTTC GTTCGGATTG
ATGAACAAAC TTTCGTTGTA TGAAAGTTTA GCAGGGAAGA GAAATATTTA TGAGCAGTTG
TGTAAGACTA CATCATGGGA ATGTTCCAAT TTCAAGAGCC ATTATGTGGA GATTCACGAA
AAGAACAAAT TGGAGGTTGA GATTGCATCT TTGCAAAGTA TGATCTCGGA CGAGAACTTG
GAATTGCTTC CTGACTACGC CCAACGTTTG CAGGTTTTGG AAACAATGGG TTTCATAGAT
GAACAGCAAA ATGTGGTATT GAAGGGCAGA GTCGCCTGTG AAATCAACTC TGGTTGGGAA
CTTGTAGTCA CAGAATTGGT TTTGGATAAC TTCCTTGGAG ATTTCGAACC AGAAGAGATT
GTTGCATTGC TTTCGTGTTT CGTCTATGAA GGTCGTACTA ATGAAGAGGA GCCACCATTG
ATAAACGGAC GATTAGAAAG AGGCAAAACA AGAATTTTGG AACTAACCGA GAAGTTGTTA
GATGTGTACG GAGAACATCA AGTGTCTTTG ACTTCTGAAG AAGAAGAATT CTTGGATAGA
AAGAGATTTG CCTTGACCAA TGTGGTGTTT GAGTGGGCAA GAGGTCTTTC ATTCAACGAG
GTCATGCAAA TCAGCCCAGA AGCAGAAGGT ACCATTGTTA GAGTCATCAC CAGATTGGAT
GAAGTCTGTC GTGAAGTCAG GAATGCTGCT TTAATAGTTG GTGATTCAAC ATTGTCCCAA
AAGATGAGCG TCGCCCAAGA GAAGATAAAG AGAGATATTG TCTTCTGTGC GTCGTTGTAC
TTGTAGATAT TCTACATTAA ATTGTAATAT ATAATATTAC CTCAGCCTTA TACTTTCAAA
GCGAGAGTCA TCTTTATAAC TATTTTTATA CATCAATACT GTAAATTAGC TATATACATG
GAAAAGTACA AATGCAATGA TAATCGTGCT ACAGCCGAGT CAACGCTTCT GATGTTAAGT
TTATGATCCC CAATCCCCCA TGGATTACCT TCTTGAGAAG GAACAGTTCC CGTACCTTTT
GTCTGTCGAA CTTGATGGTA AGTAGCCCAA TCATGGTGTA TAAGCTACCG ATGCTAGTTC
TGTCTAAGAT GCCGGCTTTG ACTTGTGCAT ACGTTGTTTC GTCAGCAATA CGACCGAACT
TCATCGCCCC ACGATAAGGC AATATGCAAT TATAGAGCAA GTTTCTCTTC ATGAACTCTG
GAATTACTCC TTGTTCGTTA TTGAAAAAAT CCAAACTATC GAAGATATCC TTGGTAGACG
AAGAAAGGTA GCGCTCATTC ATAAAAACTG TCTCCACGTC CAACAACATC TTTAATGCGT
GCTTTCCTAT TGCCCTGATT CTGTCTGTCT CTATTAGAAC TCTATCAGTG GGGAACGTGA
TTCTCCGTTC ATCTACAGCT TGTAGTCGTA TATCCAAATG AAATGTCGAA AGTCCGCACA
AAATACCAAT TTTCTCCTCC AACAGAAGTG GAAACTGAGT CCCTACAAAT CTCTGAATTA
TATCCGTCCT TGGAGATATT CTGGCTTCAA AGTCTTGCTC ATTGTGCAAA TGGCTCAAGA
CTGTATTGTT GCCCAACCCA CATCTGTGGA AGAAATCAGA CTCAAAATCG ATTGCTGAGC
GATCGTAGAA TGAAGGCTTA ATTCCATCGT ATGTGATTCG TTTGGCTGAG TTCATCTTTG
AGTTGAGAAG ATACAAATCT TCACTCAGAA TCATATCTGC TGAGTGCAGA CGTCTCCTCG
AAGTACTGTA GAATCGCAGT TGAGGTAGTT TAGCAATAGG AGGAGACACC TTCTCGAGCG
CTCGAAATAG ATAGCGCCTG TAAAGCATGA TGTGAAATAG TCCAGCAAGG AAACCAACAA
GTTCCAGCCC TGTTCTGTCT T
 
Protein sequence
MSVDSGAEDD ALRSILDPHT RTNFREDFGE DFAAQDQELL NSYVAPSDHV TWEIQRSVQT 
VPQVDKQKVH RLLLKSPERM RRTSYRLKRN ILFGQVTGYK EELRQADIDN AKAENSMSVN
RKYTTKLEAL RGRSSYLPFN PGGIIGDLKE VKPIVKTKRS HRDQYGLLDR PPDLSRGLKL
DESQQNQQIE SLAESIDSLK MLNEVNDLDD EGTKQSSQEQ PSSQVFPVPF VAAEIEGIVV
PDFVAINAAS KAKRKQKSWA HVVDLDHTID NFHELIPNMA RTWPFELDTF QKEAVYHLEK
GDSVFVAAHT SAGKTVVAEY AIAMASRNLT RTIYTSPIKA LSNQKFRDFK ETFKDTDVGL
ITGDVQINPG ANCLIMTTEV LRSMLYRGAD IIRDVEFVIF DEVHYVNDID RGVVWEEVII
MLPDHIKYIL LSATVPNTFE FANWVGRTKE KDIYVISTPK RPVPLEIFIS AKDNMFKVVD
SHRVFSEDEF KKHKEHLENS KKKPGLPKAS MGSGTRGGPG GSARGGNRGG RGGQSANRGR
GNLVTRAGGR FFAQDGPNKG TWLNLVQYLK KSNLLPCVAF VFSKKKCEEY ADSLTSVDLC
TAREKSEIHM FIDKSLFRLK KEDRELPQIL KIREMLSRGI AVHHGGLLPI VKECIEILFA
KTLVKVLFAT ETFAMGLNLP TRTVVFSSLR KNDGRSFRNL LPGEFTQMSG RAGRRGIDAT
GTVIVMAYND PLSPVDFKEI TLGTPTKLQS QFRLTYNMIL NLLRIEALPV EEMIKHSFSE
NSTQVLLPEN QKKVDKLLLQ SHSLKLTPCE ECDLEGIQET YDLMKSYEVL YGQLTALIHE
VSASKLQILK SGRLVFFRDN NKVVRMGAIV KSDNSTDSVS IITFDHGKPF EEDSAMFKLP
FVPIYEYRLM NFKKIIFNGN LRVESVPYES ICFICGYAIM ANIFQVLQNE EKAVSEFKEQ
INSILEFQNE IEEVSFGLMN KLSLYESLAG KRNIYEQLCK TTSWECSNFK SHYVEIHEKN
KLEVEIASLQ SMISDENLEL LPDYAQRLQV LETMGFIDEQ QNVVLKGRVA CEINSGWELV
VTELVLDNFL GDFEPEEIVA LLSCFVYEGR TNEEEPPLIN GRLERGKTRI LELTEKLLDV
YGEHQVSLTS EEEEFLDRKR FALTNVVFEW ARGLSFNEVM QISPEAEGTI VRVITRLDEV
CREVRNAALI VGDSTLSQKM SVAQEKIKRD IVFCASLYL