Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_85060 |
Symbol | |
ID | 4840487 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009047 |
Strand | + |
Start bp | 524162 |
End bp | 524981 |
Gene Length | 820 bp |
Protein Length | 158 aa |
Translation table | 12 |
GC content | 40% |
IMG OID | 640391802 |
Product | predicted protein |
Protein accession | XP_001386119 |
Protein GI | 126139193 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG5078] Ubiquitin-protein ligase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.540624 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCTCT GTAAGACGCG TTTACAAGAA GAAAGAAAAC AGTGGAGAAA AGATCACCCC TTCGGCTTCT TTGCCAAACC ATGTAAGGCT CCAGATGGGT CTTTAGACTT GACTCAATGG ACAGCTGGAA TTCCAGGAAA AGCTGGCACC TTGTGGGAAG ACGCAGTTTA TCCGATTACT ATCAGTTTTC CCGAGGAGTA TCCGTCAAAG CCTCCCAAGG TAAAGTTTCC AGCCAACTTC TACCATCCCA ATGTGTATCC AAGTGGGACC ATCTGCTTGT CGATTTTGAA TGAAGAACAG GACTGGAGAC CTGCCATCAC GTTGAAACAG ATTGTATTGG GAATACAAGA GCTTTTGGAT ACGCCTAATC CTGATTCTCC TGCTCAGGAA CCAGCTTGGA AGGCTTTCAG TAAGGATAGG ACCATGTATG ATAAAAAGGT CAAGGAGCAA GCCAAAAGGT ATGTGAATGC CGGATGAAGA AGAAGAAGAA GAAGAAGACG AAAATAGATG ACGACCCCAG AAGCTAAAGA TTCTAGTATT CGTACTTAGA AAATGTTAGG AATCTTAATG GCGATTGGGT TTTGTCAAAT ATGAAATTGG GATATCAATA CTAGGTAAAT GTGAAAAATG AGTTGTTCAT TTTCTAAGGA ATTCTATCAA TAAATTGTCG TCTTAAATGA TAATATGGAT TTTCTTTTCA TCATTATCTT GACATCCCAG TTATCGCTGA TCTTCGCTTT ACCTCTAGTT CTTCTATTGT ACTATATATG TTCCCAAATT GCATTATTCT CTATTATAAT ACACGAATAA CGATATATTC
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Protein sequence | MSLCKTRLQE ERKQWRKDHP FGFFAKPCKA PDGSLDLTQW TAGIPGKAGT LWEDAVYPIT ISFPEEYPSK PPKVKFPANF YHPNVYPSGT ICLSILNEEQ DWRPAITLKQ IVLGIQELLD TPNPDSPAQE PAWKAFSKDR TMYDKKVKEQ AKRYVNAG
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