| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_73542 |
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| Symbol | NIK1 |
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| ID | 4840773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009047 |
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| Strand | + |
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| Start bp | 235611 |
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| End bp | 239148 |
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| Gene Length | 3538 bp |
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| Protein Length | 1118 aa |
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| Translation table | 12 |
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| GC content | 39% |
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| IMG OID | 640392088 |
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| Product | histidine kinase osmosensor |
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| Protein accession | XP_001386063 |
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| Protein GI | 150866454 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CAATCAAGAA ACAGAAGACA GTAGACTCTG CTGTCGCCGA ACAAGGTCCA GAACAAAACG
GAACTAGTAT GGATTCTTCG CGTATCTTGG CCCTCCTCGA GGACCCCGAA CTGTTCCAAC
AGAATTACGA ACAAATACGA TACGATATCA TCAGCCATAT CAAACAACAA GACCTGGTCA
TCGCGAATGT CACCAATGAG TTGGCCACCT CTAAGACTGC AAACAAGGCT TTCAAACAAG
CTTTAAGTGA GATCGGTACC GTGGTTATCT CTGTCGCCAT GGGTGACTTG TCCAAGAAGG
TAGAGATTCA TACGGTGGAA TCAGATCCGG AGATTTTGAA AGTCAAGATT ACAATCAATA
CCATGATGGA CCAGTTACAA GCTTTCGCTA ACGAAGTCAC TAAAGTTGCA ACAGAAGTTG
CCAATGGTGA ATTGGGTGGA CAGGCAAAGA ACGAAGGGTC AGTAGGTATC TGGAGATCGT
TGACGGATAA TGTCAATATT ATGGCTCTCA ATTTGACAAA CCAAGTTAGA GAAATTGCTG
ATGTTACTCG GGCTGTCGCT AGAGGTGACT TGTCGAGAAA GATTAATGTA CATGCTCAAG
GTGAAATTTT ACAATTGCAA ATGACTATAA ACACCATGGT AGATCAGTTG AGAACATTTG
CGTTTGAAGT GTCTAAGGTA GCCCGTGATG TGGGTGTTTT GGGTATATTG GGTGGTCAGG
CTTTGATCGA AAATGTTGAA GGTATCTGGA AGGAATTAAC TGATAATGTA AACGCTATGG
CTCTTAATTT AACGACACAA GTCAGAAATA TTGCGAACGT TACAACTGCG GTAGCCAAAG
GTGATCTATC TAAGAAAGTG ACGGCAGACT GTAAAGGAGA AATTCTTAAT TTAAAATTGA
CTATCAATCA AATGGTGGAT CGATTACAGA ATTTTGCATT GGAAGTTACT ACGTTATCAA
GAGAAGTCGG TACCTTGGGT ATTTTGGGTG GTCAAGCAAA TGTCCAAGAT GTCGAGGGCG
CATGGAAAGC AGTCACAGAA AATGTCAATT TGATGGCTAC AAATTTGACC AACCAAGTGA
GATCCATTGC TACTGTTACA ACTGCCGTCG CGCATGGCGA CTTGTCTCAG AAAATTGATG
TGCACGCTCA GGGTGAAATC TTGCAATTGA AGAATACCAT CAACAAGATG GTGGATTCTT
TACAACTTTT CGCATCGGAA GTTTCCAAGG TTGCTCGGGA TGTCGGTATT AATGGTAAGT
TAGGAATTCA GGCTCAAGTC AGTGACGTCG ATGGTTTATG GAAAGAAATC ACTTCTAATG
TCAATACTAT GGCTTCCAAT TTGACCTCAC AGGTCAGAGC CTTTGCTCAG ATTACTGCTG
CAGCAACAGA TGGTGATTTC ACTAGGTTTA TTACTGTTGA AGCCAGTGGT GAAATGGATG
CCTTGAAGAC CAAGATTAAC CAGATGGTGT TGAATTTGAG AGAATCTATT CAGAGGAATA
CTGCTGCTAG AGAAGCGGCC GAATTGGCTA ACAGCGCCAA GTCGGAATTC TTGGCGAATA
TGTCGCATGA AATTAGAACC CCTTTGAATG GTATAATTGG TATGACACAA TTATCATTGG
ATACTGAATT GACTCAATAT CAACGTGAAA TGTTATCGAT TGTCCACAAT TTAGCCAACT
CTCTTTTGAC CATTATTGAT GATATTTTGG ATATTTCGAA GATTGAAGCT AACAGAATGA
CAGTTGAACA GATTGATTTT TCGTTACGTG GAACAGTCTT TGGTGCATTA AAAACACTAG
CAGTTAAGGC GATTGAGAAA TCTCTTGATT TGACCTATCA GTGTGACTCC TCATTCCCGG
ATAACTTGAT TGGAGATTCT TTCAGATTGA GACAAGTCAT TTTGAATTTG GCAGGAAATG
CTATCAAGTT TACTAAGCAG GGTAAAGTGA GTGTCAGTGT AAAGAAATCT AGCAAGTTTA
CTGACGATTC TGAGAAGTTG TTGCTTGAAG TCTGTGTGAG CGATACTGGC ATTGGTATTG
AGAAAGATAA ATTGGGTTTG ATTTTCGATA CTTTCTGTCA AGCTGATGGT TCTACAACTA
GAAAATTTGG TGGTACTGGT TTGGGGTTAT CAATTTCTAA ACAATTAATC CATTTAATGG
GTGGTGAAAT CTGGGTTACT TCAGAATACG GTTCTGGCTC TAACTTTTAC TTCACCGTAT
CCGTTTCTCC ATCGAATATA AGATATACAA GACAGACAGA ACAATTGTTA CCATTCAGTT
CTCACTATAT CTTATTTGTA TCTACTGAGC ATACTGACGC AGAATTGGAA GACATCAGAA
ACGGAATTAT TGAGCTTGGA TTAAATCCCG TGATTGTCAG AGATATAAGA GATGCTAGTT
TAACCGACCC AGTTAAGTAC GATATCATTA TGATTGATTC GATCGATATT GCGAAGAACT
TGAGATTGTT ACCTGAAGTT AAGTACATTC CTTTGGTATT GCTCCATCAT TCTATCCCAG
AATTGAATAT GAGAGTTTGC ATCGATTTGG GTATTTCTTC TTACGGCAAT ACCCCTTGTA
CGATAACAGA CTTAGCAAGC GCAATTATAC CTGCATTAGA ATCAAGATCA ATTGCTCAAA
ACTCAGATGA GTCAGTGAGC TATAAGATAT TGTTGGCAGA AGATAACCTT GTCAATCAGA
AATTAGCTGT GAGAATTTTG GAGAAGCAAG GTCACCAAGT AGAAGTTGTT GAAAATGGGT
TAGAGGCATA CGAAGCTATC AGAAAGAAGA AATACGATGT TGTTCTTATG GATGTACAAA
TGCCTGTTAT GGGAGGTTTC GAAGCTACAG AAAAGATTAG ACAATGGGAA AAGAAGTCCA
ATCCAATCGA TTCTTTGAGT TTCAGAACCC CAATTATTGC TTTAACTGCC CATGCGATGT
TAGGTGATCG AGAAAAGTCG CTAGCTAAGG GAATGGATGA CTATGTTTCC AAACCTTTGA
AGCCCAAGTT GTTAATGCAG ACTATAAACA AATGTATTCA TAATATCAAC CAGTTGAAAG
AATTATCAAA GCAGAATAAT AGCAATAGAA CATCAGAATT TGCTAAAAAT TTGAAGAAGG
GATCAATTAA GAGCGGAGAG CATCCAAATT TATTATCAAA TATTTCCAGT CCAACACTAG
TCAATGCAAT GACAAATGGA AGCAATTCAT CGCGTTCAAC TCCTCCATTT TCTGGTTCAG
ATCTGTATGG TGAGAGCCCA TCAATAAAAA AAGCAAATTC GAACGACTTC ATAGCCAAAT
CGAGACCAGG ACAACTTTCC ATGAATTCTA GATCAGTTAC AGAGAGTCAA ATACCAAAAG
CGCAATCTAA GGAGGATGGA AAGGACGGAG AGTACTTCCT GCTGAAGATT GAGACTCTTG
AGTAGTTTCT ACTACGTTCT ACAGTATTTT TCTACAATAG ACTCTTGATG CAAGGGTTGT
GGAAACCACA CAGTTTGTAC ACTAAATAGA TAATCATGTA AATGGATATG TATCATGT
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| Protein sequence | MDSSRILALL EDPESFQQNY EQIRYDIISH IKQQDSVIAN VTNELATSKT ANKAFKQALS
EIGTVVISVA MGDLSKKVEI HTVESDPEIL KVKITINTMM DQLQAFANEV TKVATEVANG
ELGGQAKNEG SVGIWRSLTD NVNIMALNLT NQVREIADVT RAVARGDLSR KINVHAQGEI
LQLQMTINTM VDQLRTFAFE VSKVARDVGV LGILGGQALI ENVEGIWKEL TDNVNAMALN
LTTQVRNIAN VTTAVAKGDL SKKVTADCKG EILNLKLTIN QMVDRLQNFA LEVTTLSREV
GTLGILGGQA NVQDVEGAWK AVTENVNLMA TNLTNQVRSI ATVTTAVAHG DLSQKIDVHA
QGEILQLKNT INKMVDSLQL FASEVSKVAR DVGINGKLGI QAQVSDVDGL WKEITSNVNT
MASNLTSQVR AFAQITAAAT DGDFTRFITV EASGEMDALK TKINQMVLNL RESIQRNTAA
REAAELANSA KSEFLANMSH EIRTPLNGII GMTQLSLDTE LTQYQREMLS IVHNLANSLL
TIIDDILDIS KIEANRMTVE QIDFSLRGTV FGALKTLAVK AIEKSLDLTY QCDSSFPDNL
IGDSFRLRQV ILNLAGNAIK FTKQGKVSVS VKKSSKFTDD SEKLLLEVCV SDTGIGIEKD
KLGLIFDTFC QADGSTTRKF GGTGLGLSIS KQLIHLMGGE IWVTSEYGSG SNFYFTVSVS
PSNIRYTRQT EQLLPFSSHY ILFVSTEHTD AELEDIRNGI IELGLNPVIV RDIRDASLTD
PVKYDIIMID SIDIAKNLRL LPEVKYIPLV LLHHSIPELN MRVCIDLGIS SYGNTPCTIT
DLASAIIPAL ESRSIAQNSD ESVSYKILLA EDNLVNQKLA VRILEKQGHQ VEVVENGLEA
YEAIRKKKYD VVLMDVQMPV MGGFEATEKI RQWEKKSNPI DSLSFRTPII ALTAHAMLGD
REKSLAKGMD DYVSKPLKPK LLMQTINKCI HNINQLKELS KQNNSNRTSE FAKNLKKGSI
KSGEHPNLLS NISSPTLVNA MTNGSNSSRS TPPFSGSDSY GESPSIKKAN SNDFIAKSRP
GQLSMNSRSV TESQIPKAQS KEDGKDGEYF SSKIETLE
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