| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_63641 |
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| Symbol | VPS21 |
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| ID | 4840479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009047 |
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| Strand | - |
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| Start bp | 449364 |
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| End bp | 450011 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 12 |
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| GC content | 47% |
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| IMG OID | 640391794 |
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| Product | Rab5-like GTPase |
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| Protein accession | XP_001386289 |
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| Protein GI | 126139533 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1100] GTPase SAR1 and related small G proteins |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.38675 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.213062 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTTTTC CAAATCCCGC CACCTCCGTC AAGCTTGTCT TGCTTGGAGA AGCTGCTGTG
GGAAAGTCAT CTTTAGTTTT GCGCTTTGTT AGCAATGATT TCCAAGAAAA TAAAGAACCT
ACAATCGGTG CAGCATTTTT GACACAGAAG TGTACCATTG GCGAAAGAAC AATCAAGTAC
GAGATCTGGG ACACTGCCGG TCAAGAGCGG TTTGCCTCCT TGGCTCCAAT GTATTACCGT
AATGCCCAGG CCGCCATTGT AGTTTATGAT ATCACCAAGC CTGCTTCTTT CATTAAAGCT
AGACACTGGG TGAAGGAGTT ACACGAACAG GCTTCCAAAG ATATCACCAT AGCATTGGTC
GGCAACAAGT ATGATTTGGT AGAGGACGAT ACCGAAGAAG AGAGCTTGAG AAAGGTGTCT
GTGGAAGAGG GTAAAGGTTT GGCCGAAGAG GAGGGACTCT TGTTTTTTGA AACCAGTGCT
AAAACGTCGT ATAACGTAAA CGATGTTTTC ATCGGAATAG GCTCCAAGAT TCCCGAGGCA
GCTTCGGCTG GCCCAAACCA GATCCACCAG ACCAACAACG ATGGCAGAAT CGACTTGACT
TCTGACCCCA ACAATAGACC TAGAGCTGCT GGCGACTGTG CATGTTAG
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| Protein sequence | MSFPNPATSV KLVLLGEAAV GKSSLVLRFV SNDFQENKEP TIGAAFLTQK CTIGERTIKY
EIWDTAGQER FASLAPMYYR NAQAAIVVYD ITKPASFIKA RHWVKELHEQ ASKDITIALV
GNKYDLVEDD TEEESLRKVS VEEGKGLAEE EGLLFFETSA KTSYNVNDVF IGIGSKIPEA
ASAGPNQIHQ TNNDGRIDLT SDPNNRPRAA GDCAC
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