Gene PICST_63545 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_63545 
Symbol 
ID4840483 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009047 
Strand
Start bp475614 
End bp476930 
Gene Length1317 bp 
Protein Length416 aa 
Translation table12 
GC content39% 
IMG OID640391798 
Productpredicted protein 
Protein accessionXP_001386110 
Protein GI150866487 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.434827 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00144574 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAAATC ATGTTTTGGG AGCATTGGTT ATCATTGTTC AATTATGGAG GCGGGTTGTT 
TTATCGGTTT TAAATGGGAG AAATATTTTC CAGTTTATTC TCAATTTTTT CATCAGTTTT
TCACCCGTCC TCATATGGTT GCTGATATTC AAAAATGCTG GTCTAATTCC CAATTGGACC
AGGCCACCAA TTCACGTTAA ACTTGCCATG ACACTAGATC GATACATATT TGATATATTT
TTGTATCCTA TATATGGCAT AACTTCTCTA TCGTTCCTAG TTGCTTTGTG TGGAGCTTTG
ATAAAATATC GTTACATGAT CTCTGAATCC GATTCTCGTT TGGAGTATAA CAATTCCGAT
CAACTCTCTG TTGCAGAGGA ACTAGAATTG CAGGTAACCA CTATTCCCAT GGATGCTACC
TTGTTGAACT CACCTCACTC TTTAGATGCA GATGTGACAC CTTTCTTCGA ACGGGACCTG
AATCCAGAGT TATTTGTTGA ACATTACAAT AACAACAATG GAAGAGTATC AAAAAGTCTT
GAAACCCCGA AGACCAAACC ATTAAATTGC TGGTGTCTTG CTACACCGAT TCTAGTGCCT
ACCTCATGGT TTATATTGAA TCTTGTGTAT TGGTTCAGGG ATCCCATACG AACTCCTAAG
GATTTACTAG CCTGGTTCTT GTATGTTGTT TGCCATCTCG TCGCCCCAAT TTTCACTGCA
ATCTGGTTAT ATTTATTTCA ACCTCCTGGT GCTCTTAGAT TGTTTTCTTT GGGTCTAGGT
ATTCAGAACA TAGCAGGTGT TGTTACTCAT TTGATATTTC CGAACGTGCC TCCATGGTAT
ATTTATTTTT ATGGTGAAGA GACAATTCCT GATTATGATA TGCCTGGCTT TGCTGCTGGG
CTCATAAGAA TAGACATGAT CATGGGTACA CATATTCATA CTGCTGGTTT TCATATATCT
CCAATAGTAT TTGGAGCACT CCCATCATTG CATTCGGCAA TGGCGGTGAT GGTATTCTTA
TTTGTATCAT ATTATTCGCG AAATATGGGA GTAAAGATCG CCTACCTACT CTACGTTGTT
TTACAGTGGT GGGCAACTAT CTACTTGGAT CACCATTGGC GACTAGATTT AATTGTTGGT
ATGTTATATT CTATTGCAAG TTTTTCGTTT CTTCTTTTCT GGTCAAGAGG ACTATCATTT
GTGGAAAGGA ACTTCATCCT CGCCAGAAAA CGATGTGATT TCAAGAATGG AAGCACTGCC
GGCATGCGTA TATTCAGAAA TACCAAGTTA CAAACCGTTT TCGATCCATA CAGCTAG
 
Protein sequence
MKNHVLGALV IIVQLWRRVV LSVLNGRNIF QFILNFFISF SPVLIWLSIF KNAGLIPNWT 
RPPIHVKLAM TLDRYIFDIF LYPIYGITSL SFLVALCGAL IKYQELELQV TTIPMDATLL
NSPHSLDADV TPFFERDSNP ELFVEHYNNN NGRVSKSLET PKTKPLNCWC LATPILVPTS
WFILNLVYWF RDPIRTPKDL LAWFLYVVCH LVAPIFTAIW LYLFQPPGAL RLFSLGLGIQ
NIAGVVTHLI FPNVPPWYIY FYGEETIPDY DMPGFAAGLI RIDMIMGTHI HTAGFHISPI
VFGALPSLHS AMAVMVFLFV SYYSRNMGVK IAYLLYVVLQ WWATIYLDHH WRLDLIVGML
YSIASFSFLL FWSRGLSFVE RNFILARKRC DFKNGSTAGM RIFRNTKLQT VFDPYS