Gene PICST_33517 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_33517 
SymbolIFG3 
ID4840640 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009047 
Strand
Start bp846915 
End bp848100 
Gene Length1186 bp 
Protein Length348 aa 
Translation table12 
GC content41% 
IMG OID640391955 
ProductD-aspartate oxidase 
Protein accessionXP_001386174 
Protein GI150866535 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAAAT ACGTGATAGT AGGGTGAGTA TATTGAAAAT AGTGGGTCAA TTTTGAATTT 
TTCAGAATTT TTCACTTATC TGGCTCTATG CATATGAATT AGTGAACAAA TTAGATAGAG
TCACATTCAC CGATCTTGAA GATGAAACTA ATAAAATTCT AGTTCAGGGA TCATTGGGCT
CTATACGGCC TACAATCTTC TTTTAAGAGG AGTTTCTCCA AGAGAAATCA CTATCGTTGC
CGAACATCTT CCTGGGGATG AACTGATCAA CTACACTTCT CCATATGCTG GAGGAAACTT
CTCGTGTATC ACAGATGATG ACCCAAAGAC TTTGTTCTAT GACAAGCACA CGTACACGAA
CTTGAGTAGA CTCCAAAAAG AATTGGGAGG TGCTCCATGC GGCTTGGACA GATATATTTC
TACTGAATAT TGGGATACCA AGCCTTCTAA GGAGAAAATC GAATCATTAG CTTCCTATTT
ACAAGAATAC GAAATCATTG ATCAAATGAA CCTTCCCATG GGTGTAGCCT ATGGGATAAA
GTTCAGATCG TGGAACTTCA ATTGTCCCAA GTTTTTATTG AACTTCCAGA AATATCTTCA
AGAAAAGGGT ATTAGATTTA TCAAACGCAA GTTGACTCAC ATCACCCAAG CCTATCTCAC
TTCTTCAACC AAAACTGTTT TCAATTGTAC TGGAATTGGA GCCCATAAAC TCGGAGGAGT
CAATGACACA AACGTATATC CCACTAGAGG GCAAGTTGTC GTCATCAAAG CACCTCATAT
AGTTGAAAAC GTCATGAGAT GGGGAGAAGA CTATGCTACC TACATCATCA AAAGACCCTA
CTCCAAAGAC CAATTAATTC TCGGAGGATA CATGCAGAAA GACAACTGGA CCGCCGATAC
ATACAAGCAC GAGACGGAGG ATATTCTCAA GAGAACTACG GAGTTGTTTC CCAAGATTTT
GGCCGATAAC CCTTATGGTA ATGATTTGAA GGATTTGGAA ATCTTGAGAG TTGTGTCCGG
TTTGAGACCA AGCCGGTACG GAGGAGTTCG TATTGAAAAG TCTCTTGTTG AACACAACAA
GTACTTGGTT CATAACTACG GAGCCAGTGG ATACGGATAC CAGGCTGGAC TAGGTATGGG
CTACGAAGCT GTGAGATTAG CATTGGCTAG AGACAATAAC CTTTAG
 
Protein sequence
MTKYVIVGSG IIGLYTAYNL LLRGVSPREI TIVAEHLPGD ESINYTSPYA GGNFSCITDD 
DPKTLFYDKH TYTNLSRLQK ELGGAPCGLD RYISTEYWDT KPSKEKIESL ASYLQEYEII
DQMNLPMGVA YGIKFRSWNF NCPKFLLNFQ KYLQEKGIRF IKRKLTHITQ AYLTSSTKTV
FNCTGIGAHK LGGVNDTNVY PTRGQVVVIK APHIVENVMR WGEDYATYII KRPYSKDQLI
LGGYMQKDNW TADTYKHETE DILKRTTELF PKILADNPYG NDLKDLEILR VVSGLRPSRY
GGVRIEKSLV EHNKYLVHNY GASGYGYQAG LGMGYEAVRL ALARDNNL