Gene PICST_33410 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_33410 
Symbol 
ID4840435 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009047 
Strand
Start bp550039 
End bp551076 
Gene Length1038 bp 
Protein Length345 aa 
Translation table12 
GC content36% 
IMG OID640391750 
Productpredicted protein 
Protein accessionXP_001386302 
Protein GI150866637 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0501] Zn-dependent protease with chaperone function 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.841869 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.225834 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAGAG CCGTTTTTCT ACCCAAATTC ATGAAAGGTA CCATCACTCA TTCTCTTTTC 
TTTTATACAA CCATCCTGCT TATTTCAGAA TTAATAGATT TGCCATTTTC GTACTACCGA
GAATTTGTTG TGGAGGAGAA ATTTGGTTTT AACAAGCAAA CTCTTGGTCT TTGGCTCAGA
GACCACATCC TTGCGTTTTC CTTGAACACT GTTATTGTTA ATGTTGTACT TTCAGGATTG
TTGAAAATTT TTGAAATATA TGGGGAGTCA TTCATAATTT ATACAACTGG CTTCTTAGTT
GTTGTTTCTT TTGCTGTTCA ATCTTTGAGC CCTTTTATTG GAAGACTTTT CTATAAGTTC
ACTGCTTTGC AAGATGAAAA TTTGAAGCAT CAAATTGAAA ATTTAGCAAG CAAGTTCAAT
TTCCCAAAAA CAAATATTTT TGTTATAGAT GGTTCCACAA GATCATCTCA CTCAAATGCT
TATTTTGTAG GATTGCCTTG GTACAAAGAA ATTGTGATTT TTGACACTTT GATAGAAAAG
CAAACAACTG AAGGAGTTGT TGCAGTTTTG GGTCACGAGC TAGGGCACTG GAAACTCAAT
CATATACCAA AATTGATGCT AATTCAATTA TTGGACTTCA CACAGATCTT CGGTCTTTTT
GGTGTTTTTA TCTACAACAA GTCCTTATAC TCCTCTTTTG GATTCACTGA CAACCAACCA
GCTATAGTTG GATTGGTATT ATATTGGATT ATTAAGGAAC CAATTTCAAC TGCCACGAGA
TTTGTTACAA ATATATTCTC CCGCAAGTTC GAGTACCAAG CAGACGAATT TGCTAAGAGT
TTAGGGTACC AAGATGAATT ATCCAAATCC TTATTGAAGT TGGATATCAA CAGCCTGTCA
GTAACAAACA CTGATTGGTT GTACTCGGCC TATTATAACG GCCACCCGTT GTTGTCCGAA
AGATTAAGTG CTTTAGGCTA CATCTCCAAG GAGAAGATTT CAAGGGAAAC CAAATCTAAG
CCATTAAAGG AAGATTGA
 
Protein sequence
MSRAVFLPKF MKGTITHSLF FYTTISLISE LIDLPFSYYR EFVVEEKFGF NKQTLGLWLR 
DHILAFSLNT VIVNVVLSGL LKIFEIYGES FIIYTTGFLV VVSFAVQSLS PFIGRLFYKF
TALQDENLKH QIENLASKFN FPKTNIFVID GSTRSSHSNA YFVGLPWYKE IVIFDTLIEK
QTTEGVVAVL GHELGHWKLN HIPKLMLIQL LDFTQIFGLF GVFIYNKSLY SSFGFTDNQP
AIVGLVLYWI IKEPISTATR FVTNIFSRKF EYQADEFAKS LGYQDELSKS LLKLDINSSS
VTNTDWLYSA YYNGHPLLSE RLSALGYISK EKISRETKSK PLKED