| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_33305 |
|---|
| Symbol | RTP1 |
|---|
| ID | 4840464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009047 |
|---|
| Strand | + |
|---|
| Start bp | 268360 |
|---|
| End bp | 269503 |
|---|
| Gene Length | 1144 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640391779 |
|---|
| Product | retrotransposon |
|---|
| Protein accession | XP_001386071 |
|---|
| Protein GI | 150866457 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000145871 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATC CGATTCAATC TACTGAGCTT CCAAAGCAAA CAGTTCAACA GGTTATGAGC
CAATTAAATT CCGGCCTCAT GGTCATTGAT ACTCTTCTTC TCAGAGGCCG TGAGAACTTT
CTGGAATGGA AAGACTGGAT GACTGGTATG TTCAGTAGCT GCGTCTTGGC TACAGAGATT
GCTGCTTATC TTTCAGAAAA AGAACTTTCC ATCACCTTTA CGGACCAGCA GGCGTTGAGC
CACAAGCTCC GTGAGCTTAT CCTCAAGTGT ATGAAGCCTG ACGTTCAGTC ATTGTTCACG
CACTACTCTC TGGGTGTCGA AACTTGGAAA GCTGTCGAAA CCAAGTATGC GATCGCCAGC
TCTAGGGATG CGGTCGGCTA TCTCAAGTAC TTATTTGGTC GTCTTGCTGA TCCGACCATT
ACGACTGAAG CTGGGTTCTT GATTGCTGAA AAGTTGACTG CGTTTATGAC GAAGTACGAT
AACGACTCCA TGAAAGCGCT CCTCTTCCTT TATGGTACGG GAAACTCCAA GGTGAGAGAT
CTATTCTTTT CTCAAGTTCG CCTGACTCCC ACGGTGACTG CGGACGAAGT TCTCAATTTC
TTTGCTTATC ATGATGAACT TTCTCCTCCT GCCACGTCCT CCGCCTTGCT GGTCCTGTCC
TCGTCTCAAT CTGCTTATTG TCAACCACTG AAGCTGAGTA CATGGCCCTC GCAACCGTTA
TAAAAGAAGT TATCTGGCTA ATCACATTCT TCAGAGAACT TCACATCCCA ATATCACTAC
CAATAATGAT TTGGGAAGAT AACACCTCAT GTATCAAACT CAGCGAACAT CCTGTACACC
ACGAACGTAC GAAACACATA GATATTCGCT ATCATTTCAT CCGTGACAAA ATCATAGACA
ATATTGTCAA ACTTCGCCAA ATCAAATCTG CTGACAACGT TGCAGACATG TTTACAAAAG
GACTAACTCC AGGAACCTTC CAACACTTAA TCCAACTATC AGGAATGCAA CTAGCATAAT
TAAATGACCA TTGGATTAAG GGGGGATGTT GAATATGCTG ATATCAAACC TAAAAGCATA
TTCTATATTC TATTTTTAAT CCAATGCGTA AACTTTATGA ATGCAGGATT TGCAGCCATT
CTGA
|
|---|
| Protein sequence | MNNPIQSTEL PKQTVQQVMS QLNSGLMVID TLLLRGRENF SEWKDWMTGM FSSCVLATEI
AAYLSEKELS ITFTDQQALS HKLRELILKC MKPDVQSLFT HYSSGVETWK AVETKYAIAS
SRDAVGYLKY LFGRLADPTI TTEAGFLIAE KLTAFMTKYD NDSMKALLFL YGTGNSKDLQ
PF
|
|---|
| |